Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60999g00003 ATGGAACCAAGATTCAGATTATTGTCACTCTTCTTCTTGTTGGTGGTGGTAGCTTTTATACCATTCAATGTAGAATCTAAGTGTAGAAGAAGTTGTGGCTTAGCTTTAGCTTCCTACTATGTTTTGCCAGGTACTTCTAACCTTACATATATTGCAACAGTTTTGGAATCAAGGTTTGTTAAAGGGCCACAAGATATTGCTAACTACAACAAAAATGGCACGACAAACACCACCATAGAAAGCAAAGACTACACCAGGGTGAATGTTCCCTTCCCTTGTGAATGCATCAATGGTGACTTTCTTGGCTACACATTCCACTATTCGCTTTCGAGTGGCAACACTTATGAATCCATTGCTGACCGGAGGTTTTCCAACTTGGTCACTGCTCAGTGGTTGACATCCTTAAACAGCTATTCACAATATGAAATTCCTGATAACGGAATGGTTAATGTCACAGTTAACTGTTCCTGTGGGGACAGTAATGTAAGCAAGGATTATGGTTTGTTCATCACATACCCTCTTAGGCCTGAGGATTCTTTGGAGTCAATTGCAAACCAGACAAAAATTGATCCTTTGTTGCTGCTGAGATACAATCCTGGTGTGAATTTCAGCCATGGAAGTGGCCTGGTTTATGTTCCTGGGAAAGATGTAAATGGTAACTATTTGCCTTTCCAATTAAGCAATAGAGGTCTGCGAGGTGGGGCTATTGCTGGAATATCTGCAGGTGTTGTAGCATTACTTCTGTTATTAGCATTTTGTGTTTATGTTAGATATTGCAGAAGGAAGAAAAAATTGCCTATAAAACATACAAGTCGGAAAACTGCTCGAGTTATGGAAGCCTATGGTAACATCCTAGGTGACTGTGTAGAGAAATCAGCAAAGTTCTCATATGAAGCACTAGCCAATGCCACAGATAACTTCAGTTTGGCAAACAAAATTGGTCAAGGTGGTTTTGCAGAAATATATTATGCTGAGCTGAATGGCGAGAGAGTTGCAATAAAAAAGATGGACAAAACAGCATCAAAAGAGTTTCTTGCAGAACTGAAAGTGTTGACTCGAGTTCATCACTTAAACCTGGTACAGTTGATTGGATATTGTGTTAAGGGGTCTCTTTTCCTTGTTTATGAATACATTGACAATGGAAACTTAAGCCAACATCTGCAAGATTCAGATAGAAAACCTTTGTCATGGTCTACCCGGATTCAAATAGCTCTGGATTCAGCAAGAGGACTTGAATATATTCATGAACATACTACCCCTTTATACATACATCGCGACATAAAATCAGCAAATATTTTAATAGACAAATTCTTCCATGCAAAGGTGGCAGATTTTGGACTAGCAAAGCTGATTGATGTAGGAATTTCATCAGTTCCCACTGGTAAAATGGCAGGCACATTTGGGTACATGCCACCAGAGTACACACGTGGCATTGTTTCTCCTAAAGTAGATGTCTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCTGCTAAAGAAGCTTTGATCAAGGATGGTGATGAAATTAAGGGCCTTTTTGATGAAGTTTTTGACCAGGAAGATCCAAAAGAAGGTCTTAAAAATCTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGATGGCACAACTTGCCAAGGCATGTACCCAGGGAGATTTGCAGCGGCGTCCGAAGATGAGGTCTGTTGTGCTTGCTCTTGGGGCACTAAGTTCAAACATTGAGAATTGGGATTTGCTTCTAAGAAAATACTGCTCTTTTGAATCTGTACTGTCTGCAAGATAG 1797 0.3968 MEPRFRLLSLFFLLVVVAFIPFNVESKCRRSCGLALASYYVLPGTSNLTYIATVLESRFVKGPQDIANYNKNGTTNTTIESKDYTRVNVPFPCECINGDFLGYTFHYSLSSGNTYESIADRRFSNLVTAQWLTSLNSYSQYEIPDNGMVNVTVNCSCGDSNVSKDYGLFITYPLRPEDSLESIANQTKIDPLLLLRYNPGVNFSHGSGLVYVPGKDVNGNYLPFQLSNRGLRGGAIAGISAGVVALLLLLAFCVYVRYCRRKKKLPIKHTSRKTARVMEAYGNILGDCVEKSAKFSYEALANATDNFSLANKIGQGGFAEIYYAELNGERVAIKKMDKTASKEFLAELKVLTRVHHLNLVQLIGYCVKGSLFLVYEYIDNGNLSQHLQDSDRKPLSWSTRIQIALDSARGLEYIHEHTTPLYIHRDIKSANILIDKFFHAKVADFGLAKLIDVGISSVPTGKMAGTFGYMPPEYTRGIVSPKVDVYAFGVVLYELISAKEALIKDGDEIKGLFDEVFDQEDPKEGLKNLVDPRLGDNYSIDSVFKMAQLAKACTQGDLQRRPKMRSVVLALGALSSNIENWDLLLRKYCSFESVLSAR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60999g00003 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Stsc60999g00003 598 ProSiteProfiles Protein kinase domain profile. 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00003 598 SMART serkin_6 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00003 598 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Stsc60999g00003 598 FunFam PTI1-like tyrosine-protein kinase 3 378 584 - -
Stsc60999g00003 598 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 11 583 IPR044812 GO:0019199|GO:0045087
Stsc60999g00003 598 FunFam LysM receptor kinase 2 286 377 - -
Stsc60999g00003 598 SUPERFAMILY Protein kinase-like (PK-like) 292 570 IPR011009 -
Stsc60999g00003 598 Gene3D Transferase(Phosphotransferase) domain 1 378 585 - -
Stsc60999g00003 598 Pfam Protein tyrosine and serine/threonine kinase 309 568 IPR001245 GO:0004672|GO:0006468
Stsc60999g00003 598 Gene3D Phosphorylase Kinase; domain 1 285 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60999g00003 Stsc-Chr60999 25627 28652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60999g00003 13 598 Receptor kinase-like Gene Family AT3G21630 53.997 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc60999g00003 PK_Tyr_Ser-Thr 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60999g00003 K13429 - gmx:100803042 720.694