Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60999g00002 ATGCAATCCAATCTTCTTTACAACACTGATGATATTGTTAGATACAACAAATATCCATCACAAACCAGAATAAATGTTCCAATGCCTTGTGATTGCATCAATGGTGGAGAGTTTCTGGGCCACACATTCCAGTACTCAGTGATTCTTGGTGACAACTACACAGCCATTGCCAAATGGGCTTTCTCAAACTTGGTGACAGTAGAGTGGCTGGAGAACACTAACAGCTATTCGCAATATGCTATTCCGGCCGGCGGAAAGCTTAATGTGACCGTTAACTGTTCTTGTGGAGACAGTAATATTAGCAAAGACTATGGATTGTTCATCACATACCCTCTTAGACCTGAGGATTCTTTGCAGTCAATTGCAAACCAGACAAAGCTTGATCCTGAGTTGTTGATGAAATACAACCCCGGTGTAAATTTCAGCAAAGGAAGTGGTCTGGTTTATATTCCCGGCAGAGGTTCGCTCTTCGATTTTCATGCCATGCTTAGCTTTCCTTTAACCTTGAGACAAATTCCTCATATTTTCTTTTCATTTCACTTTCCAGATGAAAATGGTAACTATGTGCCTCTTCACCCAAGCTCTGGAGGTCTACGAGGTGGGGTTGTTGCAGGAATATCTGTTGGAGTTGTAGCAATAATTCTGTTATTAGCATTTTGTGTTTATATTAAATGTTGCCGAAGGAAGAACGTCCGGAAGAAAATACTGCAATCAGAATATCTCGGTTCGAAAACTGCTCGAGCTAAGGAAGATAAAGTCTCTGATAGCTCCATAAACATAAGTGTAGAAAAATCAGCAAAGTTTTCATATGAAGAACTGGCCCTTGCTACAGACAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAATCTATTATGCAGAGCTGAATGGCAAGTTCTCTCCAACAACACAGAAAGCTGCAATAAAGAAGATGGACATGAAAGCATCAAAAGAATTTCTTGCAGAACTGAAAGTGTTGACACATGTTCAGCACTTAAACCTGGTCCATTTGATTGGATATTGTGTTAAGGGTTCCTTTTTCCTTGTTTATGAATACATTGACAATGGAAACTTAAGCGAACATCTAAGAAATTCAGATAGAGAACCATTGCCATGGTCTACCCGGATTCAAATAGCTCTCGATTCGGCCAGGGGACTTGAATATATTCATGAACATACAAAGCCTGTATATATCCATCGTGATGTAAAGTCGGCGAATATCTTATTAGACAAATCCTTCCATGGAAAGGTTGCAGATTTCGGACTAGCAATGCTGATTGATGCTGAAAATTCATCAGCTCCCACTGCTAATATGGCCGGCACATTCGGTTACATGCCACCAGAGTATATATATGGCAAAGTTTCTCCTAAACTAGATGTCTTTGCTTTTGGGGTTGTCCTTTATGAGCTTATTTCTGCTAAAGAAGCTGTGACTGTGATCAATGTTGGTGCTGAAATCAAGGGCCTTGTAGCTTTGTTTCGCGAAGTTTTTGATCAGCCAGACCCTAGAGAAGGTCTTAAAGAATTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTACAAGATGGCACAACTTGCCAATGCATGTACAGATGGGGATCCGAAGCGGCGTCCGAAGATGAGATCAGTGGTGGTTGCTCTTATGACACTTGGTTCAAGGACTGAGAATTGGGACATTGCTTCCTTCTATGAAAATCCAGTTCTTGTGAATCTAATGTCTGCTAGATAG 1752 0.4064 MQSNLLYNTDDIVRYNKYPSQTRINVPMPCDCINGGEFLGHTFQYSVILGDNYTAIAKWAFSNLVTVEWLENTNSYSQYAIPAGGKLNVTVNCSCGDSNISKDYGLFITYPLRPEDSLQSIANQTKLDPELLMKYNPGVNFSKGSGLVYIPGRGSLFDFHAMLSFPLTLRQIPHIFFSFHFPDENGNYVPLHPSSGGLRGGVVAGISVGVVAIILLLAFCVYIKCCRRKNVRKKILQSEYLGSKTARAKEDKVSDSSINISVEKSAKFSYEELALATDNFSLANKIGQGGFGEIYYAELNGKFSPTTQKAAIKKMDMKASKEFLAELKVLTHVQHLNLVHLIGYCVKGSFFLVYEYIDNGNLSEHLRNSDREPLPWSTRIQIALDSARGLEYIHEHTKPVYIHRDVKSANILLDKSFHGKVADFGLAMLIDAENSSAPTANMAGTFGYMPPEYIYGKVSPKLDVFAFGVVLYELISAKEAVTVINVGAEIKGLVALFREVFDQPDPREGLKELVDPRLGDNYSIDSVYKMAQLANACTDGDPKRRPKMRSVVVALMTLGSRTENWDIASFYENPVLVNLMSAR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60999g00002 583 ProSiteProfiles Protein kinase domain profile. 280 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00002 583 Gene3D Phosphorylase Kinase; domain 1 250 356 - -
Stsc60999g00002 583 CDD STKc_IRAK 286 552 - -
Stsc60999g00002 583 Gene3D Transferase(Phosphotransferase) domain 1 357 572 - -
Stsc60999g00002 583 Pfam Protein tyrosine and serine/threonine kinase 282 553 IPR001245 GO:0004672|GO:0006468
Stsc60999g00002 583 SUPERFAMILY Protein kinase-like (PK-like) 254 555 IPR011009 -
Stsc60999g00002 583 FunFam PTI1-like tyrosine-protein kinase 3 357 569 - -
Stsc60999g00002 583 ProSitePatterns Protein kinases ATP-binding region signature. 286 314 IPR017441 GO:0005524
Stsc60999g00002 583 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 568 IPR044812 GO:0019199|GO:0045087
Stsc60999g00002 583 SMART serkin_6 280 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00002 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60999g00002 Stsc-Chr60999 22488 25258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60999g00002 8 583 Receptor kinase-like Gene Family AT3G21630 51.429 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc60999g00002 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60999g00002 K13429 - gmx:100803042 714.916