Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60999g00001 ATGAAATCACAGTATGTTACAAGTTTCCAAGGTGATGAGATTGTAAGCTACAACAATGGCACCATAAAGAGCAAAGACTCAATCATATCCTCCACCAGAATCAATGTCCCATTCCCTTGTGAGTGCATCAATGGTGAGTTTCTTGGGCACGTATTCCAATACTCAGTTCTGAGCACTGACACCTATGATACCATTGCAAATTTTAGCTATTCCAACTTGGTCACTGCTGAGTGGTTGCAGAACACTAATACTTATCCACCAAATAATATTCCTTTTCCTGCAACTGTTAATGTCACTGTTAACTGTTCCTGTGGGGATGGTGATGTTAGCAAGGATTATGGGTTGTTCATCACTTACCCTCTTAGGCCTGAGGATTCTTTGGAGTCAATTGCAAGCAAGACAAAGATTGGTGCTGAGTTGCTGCAGGGATATAACCCTGGTGTGAATTTCAGCAAAGGGAGTGGTCTGGTTTATATTCCTGGGAAAGACAAAAATGGCAACTATGTTCCCTTAAGCAATGGAGGAAAAGGCCTATCCGGTGGCATTATTGCTGGAATATCTGTTGGAGTAGTAGCAGCACTTCTGCTATTGGGATTTTTTTTTTATGTTAAATGTTACAGAAGAAAGAAGATATGGAATAAGAAATTGGTAGCTGAAGATCCCAGTGAGAACTTTGTTCCCCAAGGTGAACCCTCTCATAATGCCGAAAACGGAACTTCAGCTTCTTATGATACTAGTATTATAGGTGTTAAGGTAGAAAAATCAGCAGAATTTTTGTATCAAGAACTAGCCAATGCCACAAATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGCTTTGGTGAAGTCTATTATGGAGTGCTCAACGGCGAGAAAGCTGCAATAAAGAAGATGGACATGAAAGCATCAAAAGAATTTCTCGCGGAACTCAAAGTGTTGACACGCGTTCATCACTTAAACCTGGTACGCTTGATTGGATATTGCGTCGAGGGCTCTCTTTTCCTTGTGTATGAATACATTGAAAATGGAAACTTAAGCCAACATCTAAGAAGTTCAGGTAATATAAGTACATGCTTGATAAGTTGA 1089 0.4004 MKSQYVTSFQGDEIVSYNNGTIKSKDSIISSTRINVPFPCECINGEFLGHVFQYSVLSTDTYDTIANFSYSNLVTAEWLQNTNTYPPNNIPFPATVNVTVNCSCGDGDVSKDYGLFITYPLRPEDSLESIASKTKIGAELLQGYNPGVNFSKGSGLVYIPGKDKNGNYVPLSNGGKGLSGGIIAGISVGVVAALLLLGFFFYVKCYRRKKIWNKKLVAEDPSENFVPQGEPSHNAENGTSASYDTSIIGVKVEKSAEFLYQELANATNNFSLANKIGQGGFGEVYYGVLNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRSSGNISTCLIS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60999g00001 362 ProSiteProfiles Protein kinase domain profile. 270 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60999g00001 362 Gene3D Phosphorylase Kinase; domain 1 242 340 - -
Stsc60999g00001 362 Pfam Protein tyrosine and serine/threonine kinase 272 353 IPR001245 GO:0004672|GO:0006468
Stsc60999g00001 362 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Stsc60999g00001 362 FunFam LysM receptor kinase 2 249 340 - -
Stsc60999g00001 362 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 355 IPR044812 GO:0019199|GO:0045087
Stsc60999g00001 362 SUPERFAMILY Protein kinase-like (PK-like) 248 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60999g00001 Stsc-Chr60999 16066 18011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60999g00001 12 355 Receptor kinase-like Gene Family AT3G21630 56.936 7.62e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60999g00001 PK_Tyr_Ser-Thr 5.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60999g00001 - K13429 gmx:100803042 431.024