Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60986g00006 ATGGGAGCAGCAACAACAGAAAGAATTCGCAGCAGAAAGAAGACATCATCTAGAGGACACCACAAATTTGTAGGTGTTCGTCAGAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGATTCATTGCAGAAGGTTAGGCTTTGGCTGGGAACATTCGATACGGCTGAAGATGCAGCTAGAGCTTATGACACTGCTGCTAGAGCCTTAAGAGGTGCCAATGCAAGGACAAACTTTGAGTTGCCTCCGGAGTCTGGTGGGACCGCTTCGAAGCGCGGTGCTGGTTCTGGTTTTGTTCCTGATAGCTCTGAGCCTTTCTCATTCGAGGATTCGAGTGAGGGTGTGGGTGATGGTGATGGTCTTCTTGGTGCACTCAAGGCAAAGCTGTTTGATGGAAAGGGAGGAGGAGGGAGGTTTCCTCAGCCACTTCTGGCAAAATCCGCCGCTTCAGCCCCGGTTGTTCAATCAAGCATGGTTTCAAGATCAGCTCAGAACTGTTCTGGGAAGAATAAAGAGTTGTTTTCTTCATCAGTGATCCCTAAGATGAATACTAATACTAATACTAATAATTTCAATTTAACTTGCACCACAAGCAATAGTAGTTTGCCATGTTTGGTTAGTACTTCATCAAACACTTGTTCTAAGAGTGTGATTATCCCTGCTGCTAATGATGATCATGAAGGAACTTTAACAATAAGCAGTGGTGGAGCCATTAATTCTCATCATCAATTTTGTCAAACACCATCACCGATGACTACAACATGGTCAAATAATGAAGTATCATATGAATTTCCTCCATGGACTACTCATCATCATCATAATGACAACAGTTTTCTTGCATCTTCAAGCACAGCCACTCTTACATGGCCTAATCTTTCAGGGGTAAATGAGTCAAATACTGTTGATAATATGGGATATACTACAGATCATCATAATAGCAGCAGGAATAATAATAGCCAAATGAATATGAGTAGCATGCAATTTCCTCTGATTGGTGGAGCAAGTAATGAAGGATTTTGGGCAATGGAGCAGCAACAGATTCTTCAATGTGAAGGCACCAATTGGTTTGCTTCTAATTCCTCTTGGGATCCTCTTCTCTTTGTGCCCTCTGAATTCTGA 1116 0.4292 MGAATTERIRSRKKTSSRGHHKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPPESGGTASKRGAGSGFVPDSSEPFSFEDSSEGVGDGDGLLGALKAKLFDGKGGGGRFPQPLLAKSAASAPVVQSSMVSRSAQNCSGKNKELFSSSVIPKMNTNTNTNNFNLTCTTSNSSLPCLVSTSSNTCSKSVIIPAANDDHEGTLTISSGGAINSHHQFCQTPSPMTTTWSNNEVSYEFPPWTTHHHHNDNSFLASSSTATLTWPNLSGVNESNTVDNMGYTTDHHNSSRNNNSQMNMSSMQFPLIGGASNEGFWAMEQQQILQCEGTNWFASNSSWDPLLFVPSEF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60986g00006 371 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Stsc60986g00006 371 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60986g00006 371 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Stsc60986g00006 371 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Stsc60986g00006 371 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Stsc60986g00006 371 MobiDBLite consensus disorder prediction 73 114 - -
Stsc60986g00006 371 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Stsc60986g00006 371 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Stsc60986g00006 371 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 215 - -
Stsc60986g00006 371 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Stsc60986g00006 371 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Stsc60986g00006 371 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60986g00006 Stsc-Chr60986 21307 22422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60986g00006 1 78 AP2-EREBP Transcription Factor Family AT5G19790 64.557 6.91e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60986g00006 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60986g00006 - - gmx:102661478 298.901