Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60986g00003 ATGTGGCGCGAGGTAGGAATATGCATAGTTTTGGTGTTACACTTACACCAAAGCTTGGCTGCCGGACAGAGGCAGAGGTGCGTTTCATCATCATGTGGCAAAATTTCAAACATAAGTCACCCTTTCCGATTGAAAGACGACCCAAGCAATTGCGGAAACAGCAAGTACGAACTAGAATGCGTGAACGATGTGGCCCTCTTACGGTTAACAGAGGAAGCAGAGTACAAAGTAGAAGCCATAAATTACAACAACTACACTATCAGGCTTGTGGATCCAAACATTGAAGATGACAATTGCTCCTCCCTCCCCCGCTACTTCTTGTACAGATTCAATTTCACTGATGCCCCTGACTCCCAATACGTTTCTTCCCAGCATTGGTATGGTGTGGATGACACATACCGTGCCACTCAACTGCAAGTCCCAACTTCTGAACAAGCTATGCCCCTATTTCAGCATATAATTTACGTGAACTGTATCACAACAGTGAGGGACATGGACAACAATGCTTCTTCTTCTTCCTCCTGCTTGGATCCTAATACATACGTAGTTGCTGGGGACTTGGCAGCCACAGGAGGGATATGGAAGCCTGGATGCTGGATCAACAAAATTGCTGCCACCTCTGGCTTGTTTCGGTTCCAAAAACAGCATCCCTACTATGGTTGGAGATTTCGGTATGAAACGGAAGAGGATGTTTATGATCCAACAACGTACAGTGATGTTCATAGCGCTCTGGCTTATGGATTTGAGCTCTCATGGTTGCATGCTATTTGCCATGAGCATCAATGTGGACCGGGAGCTTGCTACTTCAACCACTCCACTCAAAACGTTCTCTGTTATTCTCTCTGTTCCTATCCATACGGAGGAGCCCGCCACTGCGGAATGTACAGTCTAATCAGGTTACGAAGTCCGAAAGATATATACGAAACAGTTTTGATTCATACAAAGACAGCTATCACTGGGTGGTACGTTCTGTTATCATATTTGTCAACAAGGGTTCTGTTTGGGGTTGCACTGTTAGTTGTATTATTCATCTACAAATGGAGAAGAAGGAATCTATCAACTTATGTGAATATTGAGAATTTTCTACAAGATAATCACTTGGCTCCCATAAGGTACTCGTATAAAGAAATCAAAAGTATGACAAAAAATTTCAAGGTCAAATTGGGGCAAGGTGGCTTTGGTTCTGCATACAAGGGAAAATTACGCAGTGGTCCTCATGTAGCAATAAAGATGCTGAAACTGAAACAGTCCAAGGCTAATAATGGTCAGGATTTCATTAATGAGGTTGCAACCATTGGGAGAATACACCATGTGAATGTGGTTAGACTCATTGGATTTTGTGTTGAAGGTTCAAAGCGCGCCCTTATTTATGATTTCATGCCTAATAGTTCACTTGATAAATATGTTTTCTCTAAGGAGGAAAGCTTTCTGCTAAGCTATGAGAAGATGTATGAGATATCTTTGGGAGTAGCTCGGGGGATTTCGTATCTTCATCGGGGTTGTGCTATGCAGATTCTACACTTTGATATCAAGCCTCATAATATCCTTCTTGATGAAAACTTCGTTCCCAAGATTTCGGATTTCGGATTAGCTAAATTGTATCCTATAGACCATAGCATTGTCACTTTAACATACAAAAGAGGAACAATTGGCTACATTGCTCCTGAATTATTTTACAATAATCTTGGTGGAGTCTCATATAAAGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAGTGGCAGGTAGAAGAAAGAATTTGAATCCACATGCTGAAAATACAAGCCAAGTATTCTTTCCAACTTGGGTGTATGAACAGGTTATTAGCAAAGGAAAAGAAGTTGAATTGGAGAATGGAACAGAAGCTGAAAAGAGTATTGCAAAGAAGCTCATCATAACTGCACTGTGGTGTATACAACTCAAACCATCCGATCGACCTTCAATGAACGATGTAGTAGGAATGCTTGAAGGAGAGGTTTGCAATCTAACAATGCCTCCGAAGCCTTTGTTATATCCAACTGAAACAGCACCTGGAATGGATGACAACTTCAATTCTGAACAAATCAGAAGAGGTGACTCAGCAAATGCTACAGGTGATTTTGGTGAAACTATCCCAAGCAATGCTACACTAGAGAATAGCTTATCTGGTAGAAATTGA 2160 0.4139 MWREVGICIVLVLHLHQSLAAGQRQRCVSSSCGKISNISHPFRLKDDPSNCGNSKYELECVNDVALLRLTEEAEYKVEAINYNNYTIRLVDPNIEDDNCSSLPRYFLYRFNFTDAPDSQYVSSQHWYGVDDTYRATQLQVPTSEQAMPLFQHIIYVNCITTVRDMDNNASSSSSCLDPNTYVVAGDLAATGGIWKPGCWINKIAATSGLFRFQKQHPYYGWRFRYETEEDVYDPTTYSDVHSALAYGFELSWLHAICHEHQCGPGACYFNHSTQNVLCYSLCSYPYGGARHCGMYSLIRLRSPKDIYETVLIHTKTAITGWYVLLSYLSTRVLFGVALLVVLFIYKWRRRNLSTYVNIENFLQDNHLAPIRYSYKEIKSMTKNFKVKLGQGGFGSAYKGKLRSGPHVAIKMLKLKQSKANNGQDFINEVATIGRIHHVNVVRLIGFCVEGSKRALIYDFMPNSSLDKYVFSKEESFLLSYEKMYEISLGVARGISYLHRGCAMQILHFDIKPHNILLDENFVPKISDFGLAKLYPIDHSIVTLTYKRGTIGYIAPELFYNNLGGVSYKADVYSFGMLLMEVAGRRKNLNPHAENTSQVFFPTWVYEQVISKGKEVELENGTEAEKSIAKKLIITALWCIQLKPSDRPSMNDVVGMLEGEVCNLTMPPKPLLYPTETAPGMDDNFNSEQIRRGDSANATGDFGETIPSNATLENSLSGRN 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60986g00003 719 SUPERFAMILY Protein kinase-like (PK-like) 368 656 IPR011009 -
Stsc60986g00003 719 PANTHER RUST RESISTANCE KINASE LR10-RELATED 353 677 IPR045874 GO:0004672
Stsc60986g00003 719 MobiDBLite consensus disorder prediction 700 719 - -
Stsc60986g00003 719 Gene3D Transferase(Phosphotransferase) domain 1 460 663 - -
Stsc60986g00003 719 Gene3D Phosphorylase Kinase; domain 1 358 459 - -
Stsc60986g00003 719 ProSiteProfiles Protein kinase domain profile. 382 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60986g00003 719 SMART serkin_6 382 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60986g00003 719 MobiDBLite consensus disorder prediction 692 719 - -
Stsc60986g00003 719 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Stsc60986g00003 719 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Stsc60986g00003 719 FunFam PR5-like receptor kinase 460 667 - -
Stsc60986g00003 719 Pfam Protein kinase domain 385 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60986g00003 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Stsc60986g00003 719 FunFam serine/threonine-protein kinase PBS1-like 353 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60986g00003 Stsc-Chr60986 10552 13349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60986g00003 371 692 Receptor kinase-like Gene Family AT5G38280 49.552 1.06e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60986g00003 Pkinase 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60986g00003 - - aip:107619931 1170.61