Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60986g00002 ATGAAAATCTTGAAACCTGGAAAGTTGCAATTGTCTCCTTCTGATTTTGCTTTGGTTCTGCAAAAATGCTTAAAGGCCAAAGCCTTGAGACCTGGCATGCAGGTCCATGCCACATTGCTCACTTCTGGAACCAACATGAACGCTGTCTCTCTGAGTTCAAAGCTTGTTGCTATGTATGCTAGTTGTGGTGATCTTAAATCAGCAAGGCTTTTGTTCCCCAAAATTGAGAACCCAAATGTCTTTGCTTTCAATTGGATGGTTCTTGGTTTGGCATATAACGGTTACTATGATGATGCACTTTGCTACTTTCGTTGGATGCGTCAGCTTGGTCACTTGGGCAACAAGTTCACCTTTCCCAATGTTCTTAAGACTTGCGTTGGCTTAATGGATGTGAACAAGGGGATGCAGGTTCATGCCATGGCTTGTGAGATGGGTTTTCAAGATGATGTATCTGTTGCCAATGCTCTCATACATATGTATTGTAAATGTGGACGGGTTTCTTATGCTTGTCAGGTGTTTGATAAAATGCCTGTGAGAGATGTTGCCTCCTGGACATCGATGATTTGTGGGTTTCGTAACTCAGGCAAGATTGAGGAAGCATTGGTGTTGTTTGAGAGGATGAAGTTGGAAGGATTGGAGCCGAATGAGTTCACGTGGAATGTTATGATTGTTGCATATGCTCGCTCGAAGGATACCAGCAAGGCTTTTGGTTTTGCTGATAGAATGAAGAAAGAGGGGTTTGTTCCTGATCTGGTTGCGTGGAATGCGTTGATTTCTGGCTTCGTGCAGAATCATAAAGACATGGAAGCATTGAAGTTGTTTTGGGAGATGCTAAATTCAGGGATTCAACCTAATCAAGTGACTATTGCAGCACTGCTTCCTGCATGTGGATCATCGGGTTATATTATATGGGGAAGAGAAATTCATGGATTTATACTGAGGAAGGGGTTTGATGTCAATGTTTTCATTGCAAGTGCCCTTATTGACATGTATTCGAAATCTGGGTATTTAAAAGATGCTCATACTGTATTTAACAACATTCCCAGTAAGGATGTTGCATCATGGAATGCAATGATTGATTGCTATGGAAAATATGGGATGATTGATTCCTCCTTGGAGCTGTTTAGAAAAATGCAAGAACAAGGTTTGCAGCCAAATGAAGTTACTTTTACGTGTCTTCTTTCAGCATGCAGCCATAGTGGTTCAGTGCAAAAGGGTTTAGAGATATTCAGATCAATGAAAGAACGTTATGGGATTGAGGCAAACTTGCAGCATTATGCTTGTGTCGTTGATCTCTTCTGTCGCTCTGGAAAGACAGTTGAGGCATACGAATTTCTCAAGACGATGCCAATGCAAGTGACAGAATTAATTGCTGGAGCTTTTCTGAATGGGTGCAATATCCATGGAAGAAGTGATTTAGCTAAAATGATGGCGGATGAACTAATGAAAATGCAGTTAAAAGGATCTGGTGGCATTGTAACGCTGTCTAATATTTATGCGGCTGATGGTGAGTGGGATCGGGTTGGAAGCTTGAGAAAGGTAATGAAGGAGAAAAATGTTCATAAGAATCCTGGTATTAGTTGGCTTGAAAAGCCTGGTGAGATTCTTGATGGGAAGAAAGAAAAAGAAGGGATCAATAAGGCAGGGATATGCGACCATGAAGATGGGTGTGGAGGACAGAGGTGCGGACGCCATGGCCCTCCGATTCGATTTCCATTCCGTCTTAAAGAGAAGGAGCCTGCTCACTGTGGTTACCCTGGCTTTGATCTCACTTGTTCCAATACTCATGAAACCTTCATTGAGTTCTCTGCAGTTAAACTCCTTGTCACTGATATCCTATATGAATATAACTATTTCCGAGTCTCTGACACACAAAATTGCCTACCCAGCCAGCTCCTCAAACTAATCAATACCTCTTCCTCAATTTCTCCTTTCCAATTCTCTAGGGATCAGAGTCTTCAAGATACATCTTTCTTCAATTGTTCACCCGATGCGCAATATCAACTCTCCTGCCCCATTTACGTTGCTAGCAGCGACGAGACACTCCTCACTTCCAATCTCGTATCTTGCACCAAGATGTTTGACATTTCTTCAACCTTCTATGACTCACAAATGGTAGTTTTTTACAATACTTTGAATTTGTGCTGGTCCAAACCTAATTGTACAATATGTGAAACACAAGGTAAGAGATGTAAACTGAAGAACAATGGAACTCAAGATGAAGTTGAGTGCTTCGGCCACCATCATTATAAGTTGCTCTTGGGCTCTACAGGAGAAGATCGAGCAAGAATTGACAAGTTCTTGCAAGATTACAGGGCACTCAAGCCTACTAGATTCTCTTATGCTGATATTAAGAGGATCACAAATGGTTTCAAGGACAAGTTGGGTGAAGGAGCTCACGGTGCTGTCTTCAAGGGCATGCTCTCCTCAGAAATTGCCGTAGCTGTGAAGATACTCAACAGCAACACTGAGGGTGAAGGCAAAGATTTCACCAACGAGGTGGGAACCATGAGCAAAATTCACCATGTCAATGTGGTTCGCTTACTCGGCTTCTGTGCACAAGGATTTCACTGTGCTCTAGTTTATGATTTCTTTCCAAAAGGTTCATTGGAAAGTTTCATATCCACACCAGACAAGAAGGACATCTTCCTTGGATGGGGGAAGCTTCACCAAATAGCCCTGGGTGTTGCTAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCAACAGATCCTTCATTTTGACATCAATCCTCACAATATCTTACTAGATGACAACTTCATACCCAAAATTACTGATTTTGGCCTTGCTAAGTTGTGTTCCAAAGACCAAAGCAAAGTTTCAATGACCGCAGCCAAGGGAACCATGGGCTACATTGCACCTGAAATCGTCTCAAGAAACTTCAGAAATGTGTCTTACAAAGCAGACATTTATAGCTATGGAATGTTGTTGCTTGAAATGGTAGGAGGAAGGAAAAACATAGAGATGGAAGTTGAGGGGTCTTTGCGGATTTTATACCCCGAATGGGTGCACAATTTGCTTGATGGGGGTGATTTTCATGTTCACATTGAGGATGAGGAAGATAATAAGCTTGCAAAGAAGATTGCAATTGTGGGACTACAATGCATTCAGTGGCAACCATCAGATCGTCCTTCCATCAAAACTGTCATAGGTATGTTAGAAGGAGATGCAGACAAATTATATGTACCTCGTAATCTTTTCGACTTAACAAATTCTATTAGCAGAGGACCACAAATAACCCACCAGACAAGGCCTCTAAGTTTAGAGTTGGAGAGGATTGAAGAATGA 3309 0.4192 MKILKPGKLQLSPSDFALVLQKCLKAKALRPGMQVHATLLTSGTNMNAVSLSSKLVAMYASCGDLKSARLLFPKIENPNVFAFNWMVLGLAYNGYYDDALCYFRWMRQLGHLGNKFTFPNVLKTCVGLMDVNKGMQVHAMACEMGFQDDVSVANALIHMYCKCGRVSYACQVFDKMPVRDVASWTSMICGFRNSGKIEEALVLFERMKLEGLEPNEFTWNVMIVAYARSKDTSKAFGFADRMKKEGFVPDLVAWNALISGFVQNHKDMEALKLFWEMLNSGIQPNQVTIAALLPACGSSGYIIWGREIHGFILRKGFDVNVFIASALIDMYSKSGYLKDAHTVFNNIPSKDVASWNAMIDCYGKYGMIDSSLELFRKMQEQGLQPNEVTFTCLLSACSHSGSVQKGLEIFRSMKERYGIEANLQHYACVVDLFCRSGKTVEAYEFLKTMPMQVTELIAGAFLNGCNIHGRSDLAKMMADELMKMQLKGSGGIVTLSNIYAADGEWDRVGSLRKVMKEKNVHKNPGISWLEKPGEILDGKKEKEGINKAGICDHEDGCGGQRCGRHGPPIRFPFRLKEKEPAHCGYPGFDLTCSNTHETFIEFSAVKLLVTDILYEYNYFRVSDTQNCLPSQLLKLINTSSSISPFQFSRDQSLQDTSFFNCSPDAQYQLSCPIYVASSDETLLTSNLVSCTKMFDISSTFYDSQMVVFYNTLNLCWSKPNCTICETQGKRCKLKNNGTQDEVECFGHHHYKLLLGSTGEDRARIDKFLQDYRALKPTRFSYADIKRITNGFKDKLGEGAHGAVFKGMLSSEIAVAVKILNSNTEGEGKDFTNEVGTMSKIHHVNVVRLLGFCAQGFHCALVYDFFPKGSLESFISTPDKKDIFLGWGKLHQIALGVARGIEYLHHGCEQQILHFDINPHNILLDDNFIPKITDFGLAKLCSKDQSKVSMTAAKGTMGYIAPEIVSRNFRNVSYKADIYSYGMLLLEMVGGRKNIEMEVEGSLRILYPEWVHNLLDGGDFHVHIEDEEDNKLAKKIAIVGLQCIQWQPSDRPSIKTVIGMLEGDADKLYVPRNLFDLTNSISRGPQITHQTRPLSLELERIEE 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60986g00002 1102 SUPERFAMILY Protein kinase-like (PK-like) 771 1060 IPR011009 -
Stsc60986g00002 1102 FunFam Pentatricopeptide repeat-containing protein mitochondrial 215 302 - -
Stsc60986g00002 1102 FunFam Pentatricopeptide repeat-containing protein 8 132 - -
Stsc60986g00002 1102 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 532 IPR046960 GO:0003723|GO:0009451
Stsc60986g00002 1102 Pfam Protein kinase domain 792 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Stsc60986g00002 1102 Pfam PPR repeat 154 176 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 388 422 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 217 250 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 183 216 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 354 387 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 154 180 IPR002885 -
Stsc60986g00002 1102 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Stsc60986g00002 1102 FunFam Pentatricopeptide repeat-containing protein chloroplastic 133 214 - -
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Stsc60986g00002 1102 Gene3D Phosphorylase Kinase; domain 1 765 864 - -
Stsc60986g00002 1102 Gene3D Tetratricopeptide repeat domain 237 309 IPR011990 GO:0005515
Stsc60986g00002 1102 Pfam E motif 472 530 IPR046848 -
Stsc60986g00002 1102 Pfam PPR repeat family 249 296 IPR002885 -
Stsc60986g00002 1102 Pfam PPR repeat family 350 398 IPR002885 -
Stsc60986g00002 1102 Pfam PPR repeat family 180 227 IPR002885 -
Stsc60986g00002 1102 Gene3D Transferase(Phosphotransferase) domain 1 865 1070 - -
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 179 IPR002885 -
Stsc60986g00002 1102 FunFam serine/threonine-protein kinase PBS1-like 759 864 - -
Stsc60986g00002 1102 ProSiteProfiles Protein kinase domain profile. 789 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60986g00002 1102 ProSitePatterns Protein kinases ATP-binding region signature. 795 817 IPR017441 GO:0005524
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Stsc60986g00002 1102 Pfam PPR repeat 426 449 IPR002885 -
Stsc60986g00002 1102 Coils Coil 1097 1102 - -
Stsc60986g00002 1102 Gene3D Tetratricopeptide repeat domain 92 236 IPR011990 GO:0005515
Stsc60986g00002 1102 Gene3D Tetratricopeptide repeat domain 351 556 IPR011990 GO:0005515
Stsc60986g00002 1102 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 322 542 - -
Stsc60986g00002 1102 FunFam PR5-like receptor kinase 865 1071 - -
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Stsc60986g00002 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 416 IPR002885 -
Stsc60986g00002 1102 Pfam Wall-associated receptor kinase galacturonan-binding 557 623 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60986g00002 Stsc-Chr60986 6348 10528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60986g00002 761 1070 Receptor kinase-like Gene Family AT1G66910 46.688 9.36e-89 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60986g00002 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60986g00002 - - ahf:112783872 1008.82