Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60974g00001 ATGGGGGCTTGCACTTCCAAGCCTCACAAACCCAACCCTTACTCTTCTCGGAACCCCGACCCTCTTGCTTCTCACCCTTACGATCCCTCCCAACAAATCCCCAAAACCCCTCTCACTCCCGCCGCTCCCCGGAAAGATGACGTCATCGCCGGAAAACAGTCCCCGTTCTTCCCCTTCTACAGCCCCAGTCCCGCACGCTTCCTCAAGAAGTCTCCGGCTCCGACGCCCGGAGGAGGGAGCAAGAGTGCCAGCTCCACGCCGAGGAGGTTTTTCCGGCGACCGTTCCCGCCGCCGTCTCCGGCGAAGCACATAAGGGCTGTGCTGGCTAGGCGGCAGGGGAAGAAGGCGGCATCGGCGATACCGGAGGAAGGAGAGGAGGAGGGAGGAGGAGGCGCCGTGGATTTGGATAAGAGGTTCGGGTTCTCGAAGGAGTTGACTAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGATTCAAGAAGGGTGACCTTAAGGGCCACCAAGTTGCTGTTAAAGTCATCCCAAAAGCTAAGATGACAACGGCAATTGCAATTGAAGATGTGAGAAGAGAAGTTAAAATATTGCGAGCTTTGAACGGACACAAGAATCTGGTACAATACTATGATGCGTTTGAAGATCAAGAAAATGTCTACATTGTGATGGAGTTATGCGAAGGTGGCGAGCTTTTGGATAGGATACTATCAAAAGGAGGGAAATACTCAGAGGACGATGCAAAGGCTGTCATGGTACAAATACTAAATGTTGTCGCATTTTGCCATCTTCAAGGTGTGGTGCATCGAGATCTTAAGCCAGAGAATTTTCTGTATACATCAAAGGATGAAAGCTCGGAGTCAGAGCTAAAAGCAATAGACTTTGGGTTATCAGACTTTGTCCGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCGGAAGTTCTCCATAGATCGTACAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATCGCATATATTCTTTTGTGTGGTAGTCGCCCATTTTGGGCCCGAACGGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCCAGCTTCGATGAGCCTCCTTGGCCTTCTTTATCTGCAGAAGCAAAAGATTTTGTCAAACGCCTACTGAATAAGGATCCACGGAAACGAATATCTGCTGCTCAAGCTCTAAGTCACCCTTGGTTAAGGAATTACAATAATGTAAAAGTCCCACTTGATCTTCTAATATTTAAGCTCATGAAGATCTATATGCGATCATCATCCCTGCGAAAGGCTGCCTTAAGGGCCTTGTCCAAGACACTAACTGCTGATGAACTCTATTATCTAAGGGAGCAATTTGCATTGTTAGAACCTAGCAAAAATGGCAGCATATCCTTGGAGAACATTAGCAAGGTTGGTTCTAACATCAGCACCTAA 1470 0.4837 MGACTSKPHKPNPYSSRNPDPLASHPYDPSQQIPKTPLTPAAPRKDDVIAGKQSPFFPFYSPSPARFLKKSPAPTPGGGSKSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAASAIPEEGEEEGGGGAVDLDKRFGFSKELTSRLEVGEEVGRGHFGYTCSARFKKGDLKGHQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVQYYDAFEDQENVYIVMELCEGGELLDRILSKGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSESELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSAEAKDFVKRLLNKDPRKRISAAQALSHPWLRNYNNVKVPLDLLIFKLMKIYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENISKVGSNIST 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60974g00001 489 MobiDBLite consensus disorder prediction 1 133 - -
Stsc60974g00001 489 ProSiteProfiles Protein kinase domain profile. 149 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60974g00001 489 SMART serkin_6 149 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60974g00001 489 CDD STKc_CAMK 150 412 - -
Stsc60974g00001 489 Pfam Protein kinase domain 150 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60974g00001 489 FunFam Calcium-dependent protein kinase SK5 323 418 - -
Stsc60974g00001 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Stsc60974g00001 489 ProSitePatterns Protein kinases ATP-binding region signature. 155 181 IPR017441 GO:0005524
Stsc60974g00001 489 Gene3D Phosphorylase Kinase; domain 1 151 238 - -
Stsc60974g00001 489 FunFam CDPK-related kinase 1 142 237 - -
Stsc60974g00001 489 Gene3D Transferase(Phosphotransferase) domain 1 239 429 - -
Stsc60974g00001 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 137 480 - -
Stsc60974g00001 489 FunFam CDPK-related kinase 3 141 315 - -
Stsc60974g00001 489 SUPERFAMILY Protein kinase-like (PK-like) 145 448 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60974g00001 Stsc-Chr60974 9407 13446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60974g00001 1 489 EF-hand Containing Proteins AT3G50530 68.501 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc60974g00001 Pkinase 8.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60974g00001 K13412 - gmx:100798913 801.586