Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60973g00006 CTTGATTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAACCCAAGTTCTTGAAGAATGGTGATGCTGGTCTTGTTAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCCGAGTACCCACCACTTGGTCGTTTTGCAGTCAGGGACATGCGTCAAACTGTGGCTGTTGGAGTTATCAAGAATGTGGAGAAGAAGGACCCCTCAGGAGCCAAGGTCACCAAGGCTGCCCAGAAGAAGAATATCTGTGTTTCTCGATTCGGGAGTCTGTTTGTCGGTCCTAGTTTGAAGTCTTCACCCTCGTCTCGCACCTGTTGTTCCCAGAACTGGGTTCTTGATCGACGGTGGCAAGGCTTCTTTTAA 417 0.4964 LDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSGAKVTKAAQKKNICVSRFGSLFVGPSLKSSPSSRTCCSQNWVLDRRWQGFF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60973g00006 138 FunFam Elongation factor 1-alpha 1 82 - -
Stsc60973g00006 138 CDD EF1_alpha_III 1 78 - -
Stsc60973g00006 138 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1 81 IPR009001 -
Stsc60973g00006 138 PANTHER ELONGATION FACTOR 1 ALPHA 1 99 - -
Stsc60973g00006 138 Pfam Elongation factor Tu C-terminal domain 1 81 IPR004160 -
Stsc60973g00006 138 Gene3D Translation factors 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60973g00006 Stsc-Chr60973 35798 36294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60973g00006 1 92 Eukaryotic Initiation Factors Gene Family AT1G07930 91.304 1.96e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60973g00006 K03231 - dzi:111297638 196.438