Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60973g00003 ATGGGTTCAGGCCCCTCAAGTCATGCAATTATCAAAGTCAATCCAGGTCCTATTCTTTCTTCATACAAGAAGGGTCCTAACTTCATTACATTCCCACCTCTTCCTTGGTATCTCACAGTTCTTCCTCACTTCTCACTCATCTCAAATCGAAGAAACCCTAGCAGAGCTCCAATTCTCACTCACTTCGCCACTACCCCGAAGCAGATTCATGAGATTAATGATTTCCTTCTAACTGCAAGGAGGAAGGATGCACGATGGGTGAAGATCAAGAGGAGCAGATATGTGGTGAAGTTCAAGGTTCGATGCTCCAAGTACCTCAACACGCTCTGTGTCTTTGACTCTGAGAAAGCTGATAAGTTGAAGCAATCACTTCCTCCAGAGCAAATTAAAGAGCTGAAGTGTTGCATCTGTGATAAAGGTTTGGTGAATACTTCAGACCCTTTTGAGGAAGAAGCAGGGAAAACTGAGGATCTGATCAGAGGACTGAACCAGAGGGTTGTTGAGGCTGTGAATGGAGGAGTAAATGGGAATGGAGTTGTTGCTAGAGAAGGGAAAGTGGTGAAGGGTTTGAATGTTCAGTGGCCTGTGGTGGCAGCTGGTTCTACTGTTGTTGCAGCTGCTGTTGTGATCTGTGTCTTCCATGGAAAGCGTAGGTGA 657 0.4551 MGSGPSSHAIIKVNPGPILSSYKKGPNFITFPPLPWYLTVLPHFSLISNRRNPSRAPILTHFATTPKQIHEINDFLLTARRKDARWVKIKRSRYVVKFKVRCSKYLNTLCVFDSEKADKLKQSLPPEQIKELKCCICDKGLVNTSDPFEEEAGKTEDLIRGLNQRVVEAVNGGVNGNGVVAREGKVVKGLNVQWPVVAAGSTVVAAAVVICVFHGKRR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60973g00003 218 PANTHER 60S RIBOSOMAL PROTEIN L38 66 128 IPR002675 GO:0003735|GO:0005840|GO:0006412
Stsc60973g00003 218 FunFam 60S ribosomal protein L38 65 133 - -
Stsc60973g00003 218 Gene3D - 65 133 IPR038464 -
Stsc60973g00003 218 Pfam Ribosomal L38e protein family 66 127 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60973g00003 Stsc-Chr60973 19113 21578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60973g00003 66 126 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 86.885 1.24e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60973g00003 K02923 - mnt:112094472 115.161