Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60969g00002 ATGGTTGGAATTGGCGGTCCTAGTGGCTCTGAAAAATCAAGATATCCACCTTTTATTGCTCAGTCTAATCGCCAAAAACAACAAATGATAATGAATGGGAATTTTAGCTTCTATGAGAAGACATGGAAGGGCATTTCCCAATCAGCGAAGCAATTGATTTCGAGTCTTCTTACAGTTGATCCTAGTAGGAGACCTAGTGCACAAGAGCTCCTGAGTCATCCATGGGTCAGAGGTGATGTAGCCAAAGATGATCAGATGGACCCAGAGATTGTCTCAAGGTTGCAAAGCTTCAATGCTCGTCGTAAACTCCGGGCAGCTGCAATTGCAAGCGTATGGAGCACCACAATGTTCTTGAGAACCAAGAAACTGAAATCCTTGATAGGATCCTATGATCTTACAGAAGAGGAAATTGAAAATCTGAGGATACACTTCAAGAAGATATGCGGAAATGGGGACAATGCCACGCTTTGTGAGTTTGAGGAGGTACTGAAAGCAATGAATATGCCATCACTAATTCCTCTAGCACCACGCATATTTGACTTGTTTGACAACAACCGTGATGGAACGGTTGACATGCGAGAGATTTTATGTGGGTTTTCCAGCCTCAAGAATTCCAAAGGAGATGATGCCCTCCGTTTGTGCTTCCAGATGTATGATGTTGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCCATGCTTAGAGCTCTGCCTGATGACTGTCTTCCGGTTGATATCACTGAACCCGGCAAATTGGACGAGATTTTCGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCCCTCCAAGATGTAGTGCTTTCTTCCCTTCGCCCACAATAG 885 0.4418 MVGIGGPSGSEKSRYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGISQSAKQLISSLLTVDPSRRPSAQELLSHPWVRGDVAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSTTMFLRTKKLKSLIGSYDLTEEEIENLRIHFKKICGNGDNATLCEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDVDRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60969g00002 294 Pfam Protein kinase domain 16 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60969g00002 294 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Stsc60969g00002 294 PRINTS Recoverin family signature 178 199 - -
Stsc60969g00002 294 PRINTS Recoverin family signature 202 221 - -
Stsc60969g00002 294 PRINTS Recoverin family signature 132 151 - -
Stsc60969g00002 294 PRINTS Recoverin family signature 268 288 - -
Stsc60969g00002 294 PANTHER CALCIUM BINDING PROTEINS 124 285 IPR028846 GO:0005509
Stsc60969g00002 294 Pfam EF hand 179 194 IPR002048 GO:0005509
Stsc60969g00002 294 ProSiteProfiles EF-hand calcium-binding domain profile. 248 283 IPR002048 GO:0005509
Stsc60969g00002 294 CDD EFh 177 236 IPR002048 GO:0005509
Stsc60969g00002 294 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 119 288 - -
Stsc60969g00002 294 ProSitePatterns EF-hand calcium-binding domain. 261 273 IPR018247 -
Stsc60969g00002 294 ProSitePatterns EF-hand calcium-binding domain. 183 195 IPR018247 -
Stsc60969g00002 294 CDD EFh 211 278 IPR002048 GO:0005509
Stsc60969g00002 294 Gene3D - 90 288 - -
Stsc60969g00002 294 Gene3D Transferase(Phosphotransferase) domain 1 15 76 - -
Stsc60969g00002 294 SUPERFAMILY EF-hand 120 284 IPR011992 -
Stsc60969g00002 294 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Stsc60969g00002 294 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60969g00002 294 SMART efh_1 252 280 IPR002048 GO:0005509
Stsc60969g00002 294 SMART efh_1 174 202 IPR002048 GO:0005509
Stsc60969g00002 294 SMART efh_1 210 238 IPR002048 GO:0005509
Stsc60969g00002 294 Pfam EF-hand domain pair 209 278 IPR002048 GO:0005509
Stsc60969g00002 294 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Stsc60969g00002 294 SUPERFAMILY Protein kinase-like (PK-like) 14 96 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60969g00002 Stsc-Chr60969 4199 14699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60969g00002 13 281 EF-hand Containing Proteins AT3G10660 30.037 2.24e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Stsc60969g00002 EF-hand_7 1.2e-14 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60969g00002 K13412 - gmx:732616 505.368