Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60966g00004 ATGGAGAAGGAGCTAATCGAGCTCTACGATGCCGCCAAGAAGGCCGCCGATGCCGCCAGCTCCGAAGACGCCGGCCCTCACGAAGAGTCCCGATGTATCGATGCCCTCAATCAGCTCAAGAAATTCCCCGTCAATTACAAGATTCTCGTCAGCACTCAGGTTGGCAAACATCTTAAACATATCACAAAGCACCCAAGGCAGAAAATTCGGGCATTTGCTGTTGACCTCATTGAGATATGGAAAGACATAATATTAACCGAAACAGGCAGAATAAAGAATGGCGGCTCTGATAACAAAGACTCAGCAAATGGTGATAGAGCTAAATCTGGGAAAATGCAGAAGAGTCCTTCTGTGAAGGTTGAAAATGGTACATCAAGGCCAATTGCAGCGAAAGTACACCATGTGGATGGAAAAATTGAAAAAGATAATCATGCTGCAAATGTCAAGGTGGAAAAGATAGTCAAGGAAGAGAAGCAAGTTTCTGGAGCAAAGAAAATGTCAACAAGCTCCCCTGCTACCCCAAAGCTGAAGACTATGATTAAATCAAATGATGCAGTGAGAGACAAAATAAGGGATCTTCTCCATGAGGCTTTAGCAAAGGTTTCTGGAGAGGCTGAGGAGGATATGGTGGACGAAGTAAATGCTTGCGATCCTATTCGTGTTGCTGTGAAAATTGAGTCTGTGCTCTTTGAAAAGTGGGGTCCTTCAAATGGGGCCCAAAAGGTCAAGTATAGGTCTCTGATGTTTAACTTGAAGGATCAAAACAACCCAGATTTCCGGAGAAAAGTTCTACTTGGCTATATCGAGCCAGAGCGGTTAATCAACATGAGCACGGCTGATATGGCGAGTGAGCAGAGGAAGAAAGAGAACGAGAAGATCTACGAGAAAGCATTGTTTGAATGCGAACGTGGAGGTCCGCCAAAAGCTACGACAGATCAATTCAAGTGTGGGAGATGTGGTCAAAGGAAATGCACCTATTACCAAATGCAGACCCGTAGTGCTGATGAACCTATGACAACCTATGTCACTTGTACTGTCTGCAGTAACCGTTGGAAGTTCTGTTAA 1065 0.4469 MEKELIELYDAAKKAADAASSEDAGPHEESRCIDALNQLKKFPVNYKILVSTQVGKHLKHITKHPRQKIRAFAVDLIEIWKDIILTETGRIKNGGSDNKDSANGDRAKSGKMQKSPSVKVENGTSRPIAAKVHHVDGKIEKDNHAANVKVEKIVKEEKQVSGAKKMSTSSPATPKLKTMIKSNDAVRDKIRDLLHEALAKVSGEAEEDMVDEVNACDPIRVAVKIESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGYIEPERLINMSTADMASEQRKKENEKIYEKALFECERGGPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCSNRWKFC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60966g00004 354 SMART mid_6 184 292 IPR003618 GO:0006351
Stsc60966g00004 354 MobiDBLite consensus disorder prediction 90 124 - -
Stsc60966g00004 354 Gene3D - 162 282 IPR036575 GO:0006351
Stsc60966g00004 354 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 97 IPR035441 -
Stsc60966g00004 354 Pfam Transcription factor S-II (TFIIS), central domain 183 300 IPR003618 GO:0006351
Stsc60966g00004 354 SMART TFS2_5 8 86 IPR003617 GO:0005634
Stsc60966g00004 354 PIRSF TFIIS 2 354 IPR035100 -
Stsc60966g00004 354 Pfam TFIIS helical bundle-like domain 35 84 IPR017923 -
Stsc60966g00004 354 FunFam Probable Transcription elongation factor S-II 283 354 - -
Stsc60966g00004 354 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 98 IPR035441 -
Stsc60966g00004 354 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 19 354 - -
Stsc60966g00004 354 ProSitePatterns Zinc finger TFIIS-type signature. 316 351 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc60966g00004 354 Pfam Transcription factor S-II (TFIIS) 314 352 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc60966g00004 354 ProSiteProfiles Zinc finger TFIIS-type profile. 312 352 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc60966g00004 354 SUPERFAMILY Zinc beta-ribbon 295 352 - -
Stsc60966g00004 354 SMART Cys4_2 314 353 IPR001222 GO:0003676|GO:0006351|GO:0008270
Stsc60966g00004 354 CDD Zn-ribbon_TFIIS 307 353 - -
Stsc60966g00004 354 Gene3D - 283 354 - -
Stsc60966g00004 354 ProSiteProfiles TFIIS central domain profile. 186 309 IPR003618 GO:0006351
Stsc60966g00004 354 ProSiteProfiles TFIIS N-terminal domain profile. 1 87 IPR017923 -
Stsc60966g00004 354 NCBIfam transcription elongation factor S-II 13 354 IPR006289 GO:0003676|GO:0005634|GO:0006368
Stsc60966g00004 354 SUPERFAMILY Elongation factor TFIIS domain 2 171 284 IPR036575 GO:0006351
Stsc60966g00004 354 CDD TFIIS_I 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60966g00004 Stsc-Chr60966 12794 15536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc60966g00004 TFIIS_M 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60966g00004 K03145 - gmx:100811982 536.184