Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60954g00001 ATGAACGATGCAGTATCAATGCCCAATCCCAACGACATGGGTACACCAAACCACCATGCAGCAGCGGAAACAAAAGGTTTAAGTGGCACCAAAAGGAGAAAGTGCAACAAAATAGTCACCACTCCGAAAAAAGTTTCCAAGAGTAGCACGACAAAGAAAAATGTATTGGATAATGGAATCAAGGAGACAGTTCCATCAGTTCAAAAGATTGATTTGCTGTTGGAGGCGAAATTATCAGCGGAGGAGAATTCAAGGATGTACTCAGGGCGGCAAATACACCCATTTTTTTCTTCATGGAAATTAGGGAAGAAATCTCAGGAGCTGAATAAGACAGAACCTACTTTAAGCACAGATAGGACAGAGGATAGAAGAAAATTTTCTGGTCCTGTTCATGTTTTTGAAAATTGTGAGGATGATACCTCATCCCTTGACTGGAATAACTGGACATTTTTGGGGACGACTACCGTTGCAAAATACAGTTCAGAAAATTCGAATTTGCCTGTTTTGATGGGTTCTGTTGAACCCTTAAATTTCGATAACCTTCAGAGTGCTGTGGACCAATCTCATGCTTTAATTTCTCAGAATTCTATGTCTTGTTCAGATGGTCAGCTTCTTCAAGAAATATCACTAGCAAACTCAGTTGTGCTACCTAATGAGCAACCAGTATGCCTTTCGAAGGAAGATGATTCCAAGATGGATTTGGAGGTTGATGGAGTTGGTACTTTTTCAGGGCAAGCAGGTTGTTTCAGATCATCAGACACTCAGTCCCGGAATAGATTTCTCCAAGAAAGTATGAACTCTTACTACCATAGTTGTGAAGGTAAGTCTGAGGGAAGCTTATGGACTGACAAGTACAAGCCAACAAATGGCTCTCAGGTGTGCGGTAATTATGAATCTGTAAATTTCTTGTGTGAGTGGTTAAAACTTTGGAGGGAAAGACGAAATCAAAGCAAAATGTATTCCGCTAATGTGGATCAAAGTGACTCGCAAGACTATGATTATAATGGTTCTGATTGTGACTATGATTCGGAAAAAGTTAATCAGTACAAATTCTTGAGGAATGTTCTTGTAATTACAGGACCTGTTGGGAGCGGCAAGTCTGCAGCTGTCTATGCTTGTGCCCAAGAGCAAGGATTTGAAGTTTTAGAGCTCAATGCATCAGACTGGCGAAATGGGACTGCTGTCAAGCGGTATTTTGGAGATGCTCTTGGATCACATGGCTTGAAAAGTGTGTGTTCACAGGAGAAAAAAGCTGTGAAATTGCCCTCAGCTCCATCTTCTCCTAATGATAAAGCAGCAGAAGATATTGATAAGGATGTGATTGAACTCATAACCATATCTGATGATGGATCCAAGAGTCCTGACGGGACATCTTGGAGCTTACCTAGCAAAAATGGTGAATTTACATGTCATAATGTACAAACATTAATTCTAGTTGAGGATGTGGATGTCCTTTTTCCTCAAGACCGTGGATGCATTTCTGCCATACGACACATTGCTGAGACAGCAAAAGGGCCAATTATATTGACCAGCAATAGTAATAAGGTTGGCCTTCCAGATAATTTCGATAGACTAAATATTTCATTCTCATTGCCATTAGCAGATGAGTTGCTTTGCCATTTGTACATGGTTTGTGTCGCAGAAGATGTCAAAAACAGCCCCCTTTTACTTGAGAGATTTATACTGTCTTGCAAAGGAGATATTCGCAAAATCATCATGCAACTTCAGTTCTGGTTCCAGAGTAAACAATATGCAAAAGATCAGAAAGTGCAGACAGCTTATAGCTCAATTCCATTTGATCTTGAGGCTACTCAGCAGATACTATCAAAGATAATACCATGGAGTTTTCCTTCAGAGTTGTCCAAACTAATTGAGAAGGAAGTTGCCAAGTCAATAACCATAACGGAAGAAAACTCATGCATGCAGGGTTTAGTTACGAAAGAGTTTCATGCAAATGAAAGGAAAATTGATTCAGATGTGCAATCCATGGAGACTAATTATGTGGATGCCTCCAAGAGGAAAAGATGTATTTCAAAGTGCAGCAAGTCCAAAAGTCAATACAGTACTATGTTTGAGCTTTCTAGTTGTTCTGGACTCCAAGGAGTATCATATTGCCAAAACTGCCAAGAAAAGCCTTTGATTTCCTCTGGTTCTGTAAATAAGGATCTAAATGATAATGGACAGTCCACATATTTTGAACCTTCTTACAGTGGACAGCCCTTTGAAGTCAACAATGAATTTCCCTGCAATTTTCAGCCCGAAACATACACCAGCATGTCATTTCACAAGATAGGTTGTTCTGGTTTGGATGATTGTAAATGTTCTCAAACAGCTGAAGTTGCATGCTTAACTGAAACTTCTAAATCGTTTGATCTATCCTGTGTTCCGGAATTAACATATTCAAATGGGACAGCCACTGAAAATAGAATAGGGACCACGTTTAGTACAGTGTCTTATGGCTTTCTTTTCCCAAATAATTTTACTCCTTTTGCTCTCAGTGATTATCAGGGAATATCCAATTTCCCGCAGAAGTTGGAACCACTCGATGCTAGAATTCAAGAATCTTATTCTACAGAGGCTGTACAAGATTTCCGAGATGAGTGCAGTCATGGTTTCAAACCAAAATCAGAGTTTGACTCTGATTTGATTAGCGAAACAGATGTGGTTCAAAATCTGTGGAGGAAACTTCGTGATGGCCGAGTGGATTTAGGACAGCATGGCACTGCAGAACATCTAGGTGCTATTCAAGTTGTTAAACTTGTGAGTGGGTTGAGTAATCTACTCTCTGAAAGTGACCTGCTATTTCGCAATCATCAAGAAAAGCAATGTGGCATCATGGAACATCCCAAGTTCCTTTCTGAAGAAGCCACGTTTAGTTGGTATGATGAGCAAGCAATGATGACCACGGTTGCCGTTCACGGGTTTTGTTTTTATGCTAAATGTATTTCAGATGTGGGATCTATCTTCAGTTTTGAGCCTAAGAACAATACAGATATAATTTCAGAAATGTTGGCTTCCACGACTAATCTTATGACACTGGGGAAGTTATCTAGACAGGATCCCCGAAAAATCGCAACTCTATATACTAATAGACAATTTGAAGTGAAGAAAACAATGAACGATATGAAGAGTGAAAGCAAAACATCTCTGACGAAGGTGATCCAGTCCATTGTTCCTACAAGATTATCGCTGGCGCTGAAAGGCACTGCATTCAACGAGTATCTATCTTCAGTGCGCCAAATTTCGATTTCAGAAGGATTATGCATCTTACAAGGTGCTGAGAAGAAGAGGGGACGAAGGGGCCGGAGTGCTCAACATTACTTGAGCAGAGGCACAATGATGTCTCCTGAAGATATATCATTGGTATGTCAGGGTGATTTGTACAGTAAGATGCCTTCAAAATTCGCAGCTGAGGCGAAAAGCAACTCTACATGA 3435 0.4017 MNDAVSMPNPNDMGTPNHHAAAETKGLSGTKRRKCNKIVTTPKKVSKSSTTKKNVLDNGIKETVPSVQKIDLLLEAKLSAEENSRMYSGRQIHPFFSSWKLGKKSQELNKTEPTLSTDRTEDRRKFSGPVHVFENCEDDTSSLDWNNWTFLGTTTVAKYSSENSNLPVLMGSVEPLNFDNLQSAVDQSHALISQNSMSCSDGQLLQEISLANSVVLPNEQPVCLSKEDDSKMDLEVDGVGTFSGQAGCFRSSDTQSRNRFLQESMNSYYHSCEGKSEGSLWTDKYKPTNGSQVCGNYESVNFLCEWLKLWRERRNQSKMYSANVDQSDSQDYDYNGSDCDYDSEKVNQYKFLRNVLVITGPVGSGKSAAVYACAQEQGFEVLELNASDWRNGTAVKRYFGDALGSHGLKSVCSQEKKAVKLPSAPSSPNDKAAEDIDKDVIELITISDDGSKSPDGTSWSLPSKNGEFTCHNVQTLILVEDVDVLFPQDRGCISAIRHIAETAKGPIILTSNSNKVGLPDNFDRLNISFSLPLADELLCHLYMVCVAEDVKNSPLLLERFILSCKGDIRKIIMQLQFWFQSKQYAKDQKVQTAYSSIPFDLEATQQILSKIIPWSFPSELSKLIEKEVAKSITITEENSCMQGLVTKEFHANERKIDSDVQSMETNYVDASKRKRCISKCSKSKSQYSTMFELSSCSGLQGVSYCQNCQEKPLISSGSVNKDLNDNGQSTYFEPSYSGQPFEVNNEFPCNFQPETYTSMSFHKIGCSGLDDCKCSQTAEVACLTETSKSFDLSCVPELTYSNGTATENRIGTTFSTVSYGFLFPNNFTPFALSDYQGISNFPQKLEPLDARIQESYSTEAVQDFRDECSHGFKPKSEFDSDLISETDVVQNLWRKLRDGRVDLGQHGTAEHLGAIQVVKLVSGLSNLLSESDLLFRNHQEKQCGIMEHPKFLSEEATFSWYDEQAMMTTVAVHGFCFYAKCISDVGSIFSFEPKNNTDIISEMLASTTNLMTLGKLSRQDPRKIATLYTNRQFEVKKTMNDMKSESKTSLTKVIQSIVPTRLSLALKGTAFNEYLSSVRQISISEGLCILQGAEKKRGRRGRSAQHYLSRGTMMSPEDISLVCQGDLYSKMPSKFAAEAKSNST 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60954g00001 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 608 IPR027417 -
Stsc60954g00001 1144 Gene3D - 278 525 IPR027417 -
Stsc60954g00001 1144 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 534 595 - -
Stsc60954g00001 1144 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 34 1131 IPR004582 GO:0006281
Stsc60954g00001 1144 MobiDBLite consensus disorder prediction 1 35 - -
Stsc60954g00001 1144 Gene3D - 532 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60954g00001 Stsc-Chr60954 6169 15227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60954g00001 255 577 Core DNA Replication Machinery Family AT5G22010 22.727 1.06e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60954g00001 K26118 - gmx:100815984 1035.4