Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60950g00001 ATGCAGAACCCTTTCTTGTTGTTGCTGTTGTCGTCATTGTTGTTCTCCTTCTGTAATGGTGGTAGTTCCAGCAGCAGGAGAATCTTGCATGAACCCTTTGTACCATTGGAAGCACACCCACCCACTGAGCCACCAAAGCCACCACCTTCTTTAAACACTACTACAAACCAAACCACACCCCAAAAACAAAACCCAAAACACCCTTCTTCTACTGCAACTACCGCCGCCTCAACCACTACCACTACCCCTACCACCACAACCACAACTACAACCACAACAACAACTACACCATATGATTCACCGTTTTTCCCAAACTACCCTTCACAGCCACCACCACCACCACAACCAACATTCACAGGCTTTGCTTCCTTCCCGGCTAACATTTCCTCGCTCATTCTTCCACATTCTCCAACTCCTACTCACTCCAATTCCAAGCTCCTCCCTGTTGCGCTTTCCGCCGTCGCCTGCGCTGTCGTTGCTGCCGCCGTTTCTGCATTTTTCTACCTTCGACGCCGTCGCCGGAACCGTGACTCTGCAGCAAACAAGGATGTCCGTCCGGAATGTAGTCGCCGGCGGGAAACCGCCGCAAAGCACCGGCAGTCTCCTACCGCCGCTGGCTCCGAGTTTCTCTACCTCGGCACTGTCGTCAATTCGCGCCGCATTGAAGGAGGCGGTAGCGGCGGCGGAGATGTCAGAGATAATAGAGGCTCGTTGAGTCGGAAATTGGAGTCGCCGGAGCTCCGGCCACTTCCGCCGCTAGTAAGGCAGATTTCGGCACCGCCGGTGGTGACGGTAGCGCAAGAGGAGGCGGAGAATGAGGAGGAAGAGGAGTCGGAGATGTTTTACTCGCCGAGAGGTTCGTCCTTGGGAGGACGCGAGAGCTCCGGCGGAACCGGATCGGGTTCCCGGCGAGCATTGTCGACAATCGCCGGTGAGAATTTCGGGGAATTGAGCTCATGTTCGGTTTCTTCCTCGAATTCCGGGTCCCCGGAGCGGTGTCACTCTATCTGCATCTCCCCGCCGGCACATCGTCCGCCGCCACCGCCACAGCAGCAAACCGTGACTTCGGTTTTGTCACCTACATTATCACCAATTCACAACCAACACATTAGTTCTTCAGGTTCTTCTTCTTATTCTTCTTCGCTTTGTTCTTCAGCATGCGCAACACCAGAGAGAGGTTTTGTTGAAGATGAACAAGAAGAAGAAGAAGATACTAATAGTAAGGCTGTTAATGTTACTGAATCTCCTTTACTTTCGCCACTTTCATTGCCACCTAATAGAGATTCGGAGGAGAAAACCCTAACTGCAAATTTGGACTCATCATCATCATCACCACCACCAAAAAACAGGGTTTCGGAAACACATGCAGCTGCATCACCAAGGAATTCTAATGTCTCCAATGGAAGTAGAAAGTCTTCATCATCAGCAGCATCACCAAGGGTATCCAATGGAAGTAGAAAGCCTTTGTCACGATCAACATCGCTAGATAGGGTTTTGAAGGCTAGTGAAGTTGCATCATTGGCCTCATCTAGGATTTCTAGTTCCTCCAATGCAAGCAGAAAATCTAAATCATTATCACAAGAGAGGAATTTGGAGGCAAATAAAGTTGCAACTGCAACTGCATCTGCATCTGCATTACCATTTGCTTCACCTCCAAGGCTATCTAATGTTTCTTCCAATGGAAGTACAAAGTTTGTGGCAACATCACCATCATCTTCGGCTTTCTCCCTGCCTTCTTCTCCGGAGAAGACGAGGAGTCATAACGGTTTTGATCAATCTCCAAGAATGTCCAGTGTCTCAGACCAGTTTAGGCAACCGGGTTTGTCTTCAGTGCCATTGTCACCATCACTGCTTTCATCACCAGAGACAGAAAGAGGGTTTAATTTCAGTGCCAGTTTCAATTCAAGTGAATCAGCAACACTTGTTAATGGTGCTTCACAGAGGAAGCATTGGGAGATTCCTGCATTGTCAACAACAACAACAAATCCATTCGGTCGATCAGGATCTATTGGTAGTGTTTTGGATCAAATCGTAGCTGTTCCCGTTACTCATCCACCACCTGTACCTCCTCAGAGGAAACAATGGGCTATTCCTGGTATCTCAACACCGCTTGCTCCGCCTCCTCCGCCTCCTCCTCCTCCACCTGCCATGACACAGCAGCAGCGGCAGCGGAAGCAGTGGGAGGTGCCATCTCCTACAACACCTGTTGGCCAATCTGTTTCGAGGCCTCCAGAGTTGAGACCTCCTTCCAGGCCTTTTGTGTTGCAGAACACAACATTGGTTTCCCCTGTTGAATTGCCCCCAAGTTCTCAGGGTTCAGTTGAAAGCGAAGAGGCTGCCAAGCCAAAGTTGAAGCCTTTGCATTGGGACAAAGTAAGGGCAAGCTCTGATCGTGAAATGGTGTGGGATCAGTTGAAGACAAGCTCTTTCAAGTTGAATGAGGAAATGATTGAAACATTGTTTGTAGCGAACATGCCAAACTCGAAACAAATGGATTCTGCGTCAGGCACAGTTCTTCCCCAATCAAGCCAGGAGGAGAAAGTACTTGATCCTAGAAAGTCCCAAAACATTGCAATCTTGCTGAGAGCACTTAATGTCACTATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTGCTGATACACTTGGAGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCGAGTAAGGAAGAAGAGCGTAAATTGAAGGAATACAATGAGGACTCACCAAACAAGCTTGGTCCAGCTGAGAAATTCTTGAAGGCGTTGCTCGATGTACCTTTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGTCAATTTTGACTCTGAAGTCGAGTATCTTAGGAAATCCTTTCAAGCTCTAGAGGCTGCCTGTGAAGAGCTGCGAAGTAGTAGAATGTTCTTGAAGCTTCTTGAGGCTGTGCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGTGGTGATGCCCAGGCCTTCAAACTTGACACACTTCTCAAGCTGGCCGATGTCAAAGGCGCAGATGGAAAAACTACATTACTGCACTTTGTTGTACAAGAGATCATAAGAACTGAAGGTGCTCGTCTCTCCAATACTAACCAAACCCCAAACTCTTCCTTGGCGGAAGATGTTGCATGCCGGAGGCTTGGCCTGCAAGTAGTATCTAGTCTGAGTTCAGAGCTAGCAAGTGTCAAAAAGGCTGCTACCATGGATTCTGAGGTTCTCAGCAATGATGCCGCCAAGCTCTCCAAAGGGATTACAAACATTGCAGAGGTTGTACAATTGAATGAAAAAGCTGGATCAAATGAGAAGTTTACAGAATCAATGAACAAGTTCATTAGAATGGCTAAGGAAGAAATTCTGAAGATTCAAGCCCAAGAAAATGTTGCTTTGACCCTTGTGAAGGAAATCACAGAGTATTTTCATGGTGATTTGGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCATGGTTGTAAGAGACTTTCTTGCAGTTCTTGACCGTGTATGCAGAGAAGTTGGTATGATAAATGAGAGAACCATGGTTAGTTCAGCACATAGATTCCCTGTTCCAGTTAATCCAATGCTTCCACAACCAGTTAACCCAATGCTTCCACAACCAGTTAATCCAATGCTTTCACAACCCTTTCACAGTGACTCTTCAGATGATGATGCTCCATCATCTTAG 3699 0.4734 MQNPFLLLLLSSLLFSFCNGGSSSSRRILHEPFVPLEAHPPTEPPKPPPSLNTTTNQTTPQKQNPKHPSSTATTAASTTTTTPTTTTTTTTTTTTTPYDSPFFPNYPSQPPPPPQPTFTGFASFPANISSLILPHSPTPTHSNSKLLPVALSAVACAVVAAAVSAFFYLRRRRRNRDSAANKDVRPECSRRRETAAKHRQSPTAAGSEFLYLGTVVNSRRIEGGGSGGGDVRDNRGSLSRKLESPELRPLPPLVRQISAPPVVTVAQEEAENEEEEESEMFYSPRGSSLGGRESSGGTGSGSRRALSTIAGENFGELSSCSVSSSNSGSPERCHSICISPPAHRPPPPPQQQTVTSVLSPTLSPIHNQHISSSGSSSYSSSLCSSACATPERGFVEDEQEEEEDTNSKAVNVTESPLLSPLSLPPNRDSEEKTLTANLDSSSSSPPPKNRVSETHAAASPRNSNVSNGSRKSSSSAASPRVSNGSRKPLSRSTSLDRVLKASEVASLASSRISSSSNASRKSKSLSQERNLEANKVATATASASALPFASPPRLSNVSSNGSTKFVATSPSSSAFSLPSSPEKTRSHNGFDQSPRMSSVSDQFRQPGLSSVPLSPSLLSSPETERGFNFSASFNSSESATLVNGASQRKHWEIPALSTTTTNPFGRSGSIGSVLDQIVAVPVTHPPPVPPQRKQWAIPGISTPLAPPPPPPPPPPAMTQQQRQRKQWEVPSPTTPVGQSVSRPPELRPPSRPFVLQNTTLVSPVELPPSSQGSVESEEAAKPKLKPLHWDKVRASSDREMVWDQLKTSSFKLNEEMIETLFVANMPNSKQMDSASGTVLPQSSQEEKVLDPRKSQNIAILLRALNVTIEEVCEALLEGSADTLGAELLESLLKMAPSKEEERKLKEYNEDSPNKLGPAEKFLKALLDVPFAFKRVEAMLYIVNFDSEVEYLRKSFQALEAACEELRSSRMFLKLLEAVLKTGNRMNVGTNRGDAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSNTNQTPNSSLAEDVACRRLGLQVVSSLSSELASVKKAATMDSEVLSNDAAKLSKGITNIAEVVQLNEKAGSNEKFTESMNKFIRMAKEEILKIQAQENVALTLVKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCREVGMINERTMVSSAHRFPVPVNPMLPQPVNPMLPQPVNPMLSQPFHSDSSDDDAPSS 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 1208 1232 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 354 387 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 52 102 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 684 781 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 37 51 - -
Stsc60950g00001 1232 SUPERFAMILY Formin homology 2 domain (FH2 domain) 706 1182 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 35 119 - -
Stsc60950g00001 1232 Pfam Formin Homology 2 Domain 777 1170 IPR015425 -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 176 204 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 288 333 - -
Stsc60950g00001 1232 Gene3D Formin, FH2 domain 773 1179 IPR042201 -
Stsc60950g00001 1232 PANTHER FORMIN-RELATED 7 1215 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 103 119 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 409 499 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 221 629 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 1215 1232 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 752 776 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 719 740 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 506 629 - -
Stsc60950g00001 1232 SMART it6_source 774 1185 IPR015425 -
Stsc60950g00001 1232 ProSiteProfiles Formin homology-2 (FH2) domain profile. 774 1196 IPR015425 -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 176 198 - -
Stsc60950g00001 1232 MobiDBLite consensus disorder prediction 701 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60950g00001 Stsc-Chr60950 1207 5848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60950g00001 97 299 FH2 protein (formin) Gene Family AT3G25500 42.478 3.99e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60950g00001 - - ahf:112744322 1628.22