Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60949g00007 | ATGGAGAACTGTGCAGATTCGGAACAATTCGTGCTGCGGTCCAGTATCCGGACGGGTTTTAAGAGAGAGTTTGAATTCGCCATGAAAGCTCAATCCGAGATCTGTCGGTCATTGGGCCGGACTAGGGCCTCCAAGCATGGGAATGTGGTTCAGGTTGTGAAACACCCAATCAAAAAGCGGTCCAAGAAGTCAAGTTCAATAAAAGGGAACAGGAGTGAGTCGAAAAGTAGGGTGGTGGAAAGCGTAGATGGTGGTGGTAGAGGTGATGTTATGAGTAAAGAGGAGGCAAAGAGTGATGTTATGGATGTGGAGGAACTAAAGAATCTACATGGGGAATCTATTGGGGAGGTGGGGGCTTTGGTTGATGGTAAGGAACCAAAGAATGATGGTGATGTGGTGGATGAAAAGAGTACGGTTGGTTGTGATGGTGAGGCGAAGGAGGGTGCTGAGGTATGCTATTCGAAGGAAGATGGTGTTGTTGGTGGGCCAACACCGATTTCGGTTATAGCTGGTAGTGGTGATAGTGTGAAAGGTAAGAAGCCATTTAGAAGGTTTACTAAGTCTCTACTAAAGAGAAAGGTGGAGGATGATGCTACTGGCGCAAAGAGTGGGTATGATAAGGGAAATGATGATGCTGAAGCTGTTGAAATTGGTGGTAATAATAAGAAGCATGCTAATGATCGTGGCAAGGATGTCAAGGAGGAAATTAAGGATGGTGCATTAGTTACTATGTCCAAGGCTAGTACTAAGAGGTGCCCAACGAGTCTGAAAGAGCTTCTGGCCACAAGGATTCTTGAGGGTTTGCCAGTGAATTATGTTCACAGTGTGAAGGCAAGGAAGGCTGCAGGAACAAGGCTTCAGGGAGTGATTAGTGGTGATGGGATTGTGTGCCATTGTGAACACTGCCATGGTGCTGAGGTTGTGAAGCCTGCCTTGTTTGAGCTTCATGCTAGCAGTTCAAACAAGTGCCCTCCAGAGTATATATACCTTGAGAATGGGAGTACTCTTCAGGATGTGATGAATACATGTTTGAATATACCATTAGAAACCTTGGAAGAAGCTGTACAAAAAGTCATTGGAGGCTTCGCTATAAAGAAATCTACCTTTTGTTTTAACTGTAGAGATGCCCATGTTGTGTCGAGACTATTATGCAATTTATGCATGGAGTCGAAGAATTGTTGTCCTGACCCTCCTACTCAAACAATTGACCCTAGCAATTGCAATGTTTCACTTGCAGTTCAATCCAGATACCCAGAACCTATTGTGGTTCAAAAGCCAATAAATAATGGAATGAAGCATAGCGCATCTCGTGATAGGAGTGATGGAAAAATAACTAGGAAGGATCTACGCTTGCATAAGTTGATCTTTGAAGCAGATGTGTTGCCTGATGGAACAGAAGTAGCATACTATGTTCGTGGAAAGCGACTATTGGATGGTTATAAGCAGGGTTCTGGAATAGTTTGTAGCTGTTGTGACAAAGAGATTAGCCCCTCCCAATTTGAAGCTCATGCCGGTTGGGCATCACGTCGAAAACCTTACCTCCACATATATACATCTAATGGAGTCTCCCTCCATGAGCTGTCCATCAATTATCTAAAAGAACGGAAGTGTTTCTCCAGGAATAATGATGACCTCTGCAGTATATGTTTTCATGGAGGGAATCTTTTGTGTTGTAATGGATGCCCAAGAGCTTTTCACATTGATTGTGTTCCTCTCTCTTGTATTCCAACTGGTACCTGGTATTGTAAATACTGTCATCATGTCTTTCAGAAAGACAAATATGTGGAGCGTAATGCAAATGCTTTGGCAGCTGGGAGGATTGCAGGTGTTGATCCTTTAGCACAGATACAAGAAAGGTGCATTCGCATTGTTAAAACTCACCAAGTTCATCATGAGGGATGCGTACTTTGTAGGCAACAATGTTTTAGCAAAATCTTTAGTCCCCAAACTATGATGATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTATGAAGGACCATAACATACAGAACCTAGAGGAATTGCCAGAAGGGAATTGGTTCTGCTGCTCAGAGTGCAGTGAAGTTCACACTGCTTTGGGGAATTTAGTGGTTGGTGAGGAAGAGAATCTTCCAGATTCCCTCCTTAGCTTGATTGAAAAGAAGCATGCAGAAAAAGGTTTAGAAATCGAGGCTGGTCTTGACATTAAATGGAAGGTTCTGAACTGGAGTCGTATTGCTTCCGACAATACCAGAAAATTGCTTTCAAAGGCTGTTGCTATCCTCCATGAGCAGTTTGGTCCAATAAATTCTGATTCAAGAGCCGATTTCATTCCAGCAATGATTTATGGGAGGAAGATTGGGCATTATGATTTTCATGGAATGTACTGTGCAATTCTCACTGTCAACCAAGCAATTGTTTCTGTTGGAATATTTCGCGTCTTCGGGCACGAAGTGGCAGAGCTTCCCTTAGTGGCAACCCCTACAGACTGCCAAGGACAAGGTTACTTCCAGTGCCTCTTTTCTTGCATTGAGAGGTTGCTTGCCTCTCTAAAAGTGAAACAATTAGTCCTACCAGCCATGGAAGAAGCTGAATCAATGTGGACCAATAAATTTGGGTTTACAAGGGTAGACCAAAATGAGATAAACGATTATTGGAGACGTCTCCGATTGATGATGTTTCAAGACACCCCCTTACTGCGGAAGCCGGTTCCTACACTCTCAAGTACTTAG | 2718 | 0.4341 | MENCADSEQFVLRSSIRTGFKREFEFAMKAQSEICRSLGRTRASKHGNVVQVVKHPIKKRSKKSSSIKGNRSESKSRVVESVDGGGRGDVMSKEEAKSDVMDVEELKNLHGESIGEVGALVDGKEPKNDGDVVDEKSTVGCDGEAKEGAEVCYSKEDGVVGGPTPISVIAGSGDSVKGKKPFRRFTKSLLKRKVEDDATGAKSGYDKGNDDAEAVEIGGNNKKHANDRGKDVKEEIKDGALVTMSKASTKRCPTSLKELLATRILEGLPVNYVHSVKARKAAGTRLQGVISGDGIVCHCEHCHGAEVVKPALFELHASSSNKCPPEYIYLENGSTLQDVMNTCLNIPLETLEEAVQKVIGGFAIKKSTFCFNCRDAHVVSRLLCNLCMESKNCCPDPPTQTIDPSNCNVSLAVQSRYPEPIVVQKPINNGMKHSASRDRSDGKITRKDLRLHKLIFEADVLPDGTEVAYYVRGKRLLDGYKQGSGIVCSCCDKEISPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSINYLKERKCFSRNNDDLCSICFHGGNLLCCNGCPRAFHIDCVPLSCIPTGTWYCKYCHHVFQKDKYVERNANALAAGRIAGVDPLAQIQERCIRIVKTHQVHHEGCVLCRQQCFSKIFSPQTMMICDQCEKEYHVGCMKDHNIQNLEELPEGNWFCCSECSEVHTALGNLVVGEEENLPDSLLSLIEKKHAEKGLEIEAGLDIKWKVLNWSRIASDNTRKLLSKAVAILHEQFGPINSDSRADFIPAMIYGRKIGHYDFHGMYCAILTVNQAIVSVGIFRVFGHEVAELPLVATPTDCQGQGYFQCLFSCIERLLASLKVKQLVLPAMEEAESMWTNKFGFTRVDQNEINDYWRRLRLMMFQDTPLLRKPVPTLSST | 905 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60949g00007 | 905 | MobiDBLite | consensus disorder prediction | 197 | 230 | - | - | |
| Stsc60949g00007 | 905 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 740 | 893 | IPR000182 | GO:0016747 | |
| Stsc60949g00007 | 905 | PANTHER | AUTOIMMUNE REGULATOR | 53 | 899 | - | - | |
| Stsc60949g00007 | 905 | ProSitePatterns | Zinc finger PHD-type signature. | 546 | 585 | IPR019786 | - | |
| Stsc60949g00007 | 905 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 629 | 692 | IPR013083 | - | |
| Stsc60949g00007 | 905 | MobiDBLite | consensus disorder prediction | 66 | 97 | - | - | |
| Stsc60949g00007 | 905 | SMART | PHD_3 | 633 | 689 | IPR001965 | - | |
| Stsc60949g00007 | 905 | SMART | PHD_3 | 545 | 586 | IPR001965 | - | |
| Stsc60949g00007 | 905 | MobiDBLite | consensus disorder prediction | 57 | 97 | - | - | |
| Stsc60949g00007 | 905 | SUPERFAMILY | FYVE/PHD zinc finger | 531 | 587 | IPR011011 | - | |
| Stsc60949g00007 | 905 | Gene3D | - | 730 | 891 | - | - | |
| Stsc60949g00007 | 905 | SUPERFAMILY | FYVE/PHD zinc finger | 629 | 687 | IPR011011 | - | |
| Stsc60949g00007 | 905 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 788 | 879 | IPR016181 | - | |
| Stsc60949g00007 | 905 | ProSiteProfiles | Zinc finger PHD-type profile. | 543 | 588 | IPR019787 | - | |
| Stsc60949g00007 | 905 | CDD | PHD1_AIRE | 545 | 585 | - | - | |
| Stsc60949g00007 | 905 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 539 | 603 | IPR013083 | - | |
| Stsc60949g00007 | 905 | Pfam | Tify domain binding domain | 288 | 343 | IPR032308 | - | |
| Stsc60949g00007 | 905 | Pfam | Tify domain binding domain | 479 | 528 | IPR032308 | - | |
| Stsc60949g00007 | 905 | ProSitePatterns | Zinc finger PHD-type signature. | 634 | 688 | IPR019786 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60949g00007 | Stsc-Chr60949 | 22708 | 27933 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60949g00007 | 253 | 899 | PHD Transcription Factor Family | AT2G36720 | 39.722 | 3.05e-173 | 527 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60949g00007 | - | - | aprc:113859749 | 1036.94 |