Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60949g00001 ATGGATTGTAAGGAACATGTGTCCAACACTACTAACAATTTTAATTGTAATGTTGTTCATCATGATTCTACACATCATATAGCAAAGGGGAAAAGAACCAAGAGGTTGAGGCTTTTGTGTGGCGGTGGCACTGCCATCATGGTGGCGGCGACGGCGGCGTCTAGCTGTTCAAGCGCTTCCGGGGATCAAGGCAGCGGCAGCGGCGGCGACGGCTCGTTTTCGATTTCTTCAACCACGAATCAAGAAGAAGAAGACATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGGAGGAAGCGGTGGTGGTGGTGGTGGAGAATATCCTTCTCCTCCTCCTCCTCCTCCTCCTCATCATCACCATCAAGAACAGGCTCATCCGCCACCGCCACCTCCGCCACAAGTGGATGATCAGCAAGAAGAAGATCACGATTGTGGTAACAACAACAAGATTGAAATCAAGAGTAGGAAATTCTCCGAGATTGAAACCGCCACCGCAAACAAGAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGGGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGAGGAGAAAAAACCACCACCGCCACCACCACCTTCTCCGCCACCGCCACCACCGTCCCAAGTTATGATTGAAAGTGTCGTCCCTCCATATAAAAATAATAATCCAATAATTTCTCTACAATTTGAGAGTGGGCAAAAGGGTAATTTCCATGGGAACAGCAACAAGGCCAACAAGATTCATGAGTGCTCCATATGTGGCTCCGAATTCACATCTGGTCAAGCATTGGGTGGACACATGAGGAGGCACAGGGCTACCGCGGCCGCAGCCGCCAATAATACCGCTCAGACAACTGGACTAAGTGGTATTAAGGCTACTTCGGCCGTTATTACAACGGCAGAAGTTCAGCCTCGCAACATTCTAGAATTGGATCTTAACCTTCCCGCTCCGGAGGAGGACCTCCGGGAGGCGAAGTTTCAGTTCACTACGGCGGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGTCATTATTAG 1113 0.4942 MDCKEHVSNTTNNFNCNVVHHDSTHHIAKGKRTKRLRLLCGGGTAIMVAATAASSCSSASGDQGSGSGGDGSFSISSTTNQEEEDMANCLILLAQGGGGGSGGGGGGEYPSPPPPPPPHHHHQEQAHPPPPPPPQVDDQQEEDHDCGNNNKIEIKSRKFSEIETATANKKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAEEKKPPPPPPPSPPPPPPSQVMIESVVPPYKNNNPIISLQFESGQKGNFHGNSNKANKIHECSICGSEFTSGQALGGHMRRHRATAAAAANNTAQTTGLSGIKATSAVITTAEVQPRNILELDLNLPAPEEDLREAKFQFTTAATKKSMVLSAAPALVDCHY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60949g00001 370 MobiDBLite consensus disorder prediction 93 151 - -
Stsc60949g00001 370 Gene3D Classic Zinc Finger 173 290 - -
Stsc60949g00001 370 MobiDBLite consensus disorder prediction 137 151 - -
Stsc60949g00001 370 MobiDBLite consensus disorder prediction 208 231 - -
Stsc60949g00001 370 SMART c2h2final6 268 290 IPR013087 -
Stsc60949g00001 370 SMART c2h2final6 176 198 IPR013087 -
Stsc60949g00001 370 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Stsc60949g00001 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 295 IPR013087 -
Stsc60949g00001 370 SUPERFAMILY beta-beta-alpha zinc fingers 175 290 IPR036236 -
Stsc60949g00001 370 MobiDBLite consensus disorder prediction 56 81 - -
Stsc60949g00001 370 ProSitePatterns Zinc finger C2H2 type domain signature. 270 290 IPR013087 -
Stsc60949g00001 370 Pfam C2H2-type zinc finger 176 201 - -
Stsc60949g00001 370 Pfam C2H2-type zinc finger 268 292 - -
Stsc60949g00001 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Stsc60949g00001 370 PANTHER ZINC FINGER PROTEIN ZAT5 74 353 - -
Stsc60949g00001 370 MobiDBLite consensus disorder prediction 192 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60949g00001 Stsc-Chr60949 2517 3953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60949g00001 75 370 C2H2 Transcription Factor Family AT2G28200 40.940 1.24e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60949g00001 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60949g00001 - - aip:107629278 409.838