Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60946g00009 ATGGTTTTGTCATGGACAAGAGGGAGGGTGTTCCGGCGCGCTCGAAAAGGGAAGGACCTCCAAGTCAACGACTTGGAGGTTGAGATTTCAGTTCCTTCCCATTTCCGGTGCCCGGTCTCCCTCGACCTAATGAAGGATCCGGTAACGGTATCCACCGGTATTACCTACGACAGGGACAGTATCGAGAAATGGATCGAGGAAGGGAACAACACGTGTCCGGTGACAAAAAGGGTCTTGACAACCTTTGACATGATCCCTAACCATGCTCTTCGGAGGATGATCCAAGATTGGTGCGTGGAGCACCGTTCTTTCGGGATCGAGAGGATCCCTACACCTAGGATCCCCATTACACCGTACGAGGTTTCGGACACGTGTGCAAAGATCGTGAATGCCGCAAAAAAGGGTGATGAAAGCAAGTGCAGGGAGCTGGTGAGGAAGATCAAGGGTTGGGAGAAGGAGAGTGATAGGAACAAGAGGTGCATAGTTGCAAATGGTGCTTCTCTTGCTCTGGTCAACGCCTTTGACTTTTTCTCATCATTGGCTTTTGAGGAGAATAATAATGTTAGTAGCTTGTTGGAGGAGATCTTGGGTGTGTTGGCATGGATGAGGCCTATGAGTGAGGAGGTTAAGTCCATGTTGGGTTCAAAGAGTTCCATGAGTTGCATGGTTTGGTTCTTGTTGAAGGGTAATATAGACCTTTCCATTAAGCAAAGTGTTGCCATGTTGCTAAAGGAGGTTCCAACTGAAGTGTTGGCAAATACCCAAGGTGTTGCTGAAGGGTTGGTGAAGATGATTAAGGAGCCCATTGGGAGTGCTTCAATTACAAAGGCATGTTTATCAATGATTTTTAAATTGGTAACATATTCCAAGGGTAAGGATGTACTTTCACAAAGATTTGTGGAATTGGATTTGGTTGAAGTTTTGTTGGAGATAATTGTTGATTGTGAGAAAGGGGTGTGTGAGAAGGCCTTAGGGGTATTGGATTCAATTTGTGGGACAAAACAAGGGAAGGAGATTGCCAAGAATAATGCTCTTACAATTCCACTTGTGGTTAAGAAGCTTCTGAGGGTTTCTGAATTGAGTTCTTGCTTTGCGGTTTCAATTATTTGGAAGATTTGTGATAAGGAGGCACAAGAAGAAGAAGAAGGGGTTTTTGTTGAGGCAGTTCAAGTTGGGGTGTTCCAGAAGCTTCTTGTTTTGTTGCAAGTTGGGTGTGGTGAGAGCACAAAGGAGAAGGCCACAGAGTTGTTGAAGTTGTTGAATGGTTATAGAAGCAAGGTGGATTGTGTTGATTCATCATCTTTGGAACTTCAGCACCTTAAGAAGCCATTCTAA 1335 0.4494 MVLSWTRGRVFRRARKGKDLQVNDLEVEISVPSHFRCPVSLDLMKDPVTVSTGITYDRDSIEKWIEEGNNTCPVTKRVLTTFDMIPNHALRRMIQDWCVEHRSFGIERIPTPRIPITPYEVSDTCAKIVNAAKKGDESKCRELVRKIKGWEKESDRNKRCIVANGASLALVNAFDFFSSLAFEENNNVSSLLEEILGVLAWMRPMSEEVKSMLGSKSSMSCMVWFLLKGNIDLSIKQSVAMLLKEVPTEVLANTQGVAEGLVKMIKEPIGSASITKACLSMIFKLVTYSKGKDVLSQRFVELDLVEVLLEIIVDCEKGVCEKALGVLDSICGTKQGKEIAKNNALTIPLVVKKLLRVSELSSCFAVSIIWKICDKEAQEEEEGVFVEAVQVGVFQKLLVLLQVGCGESTKEKATELLKLLNGYRSKVDCVDSSSLELQHLKKPF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60946g00009 444 CDD RING-Ubox_PUB 32 84 IPR045210 -
Stsc60946g00009 444 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Stsc60946g00009 444 Gene3D - 122 427 IPR011989 -
Stsc60946g00009 444 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Stsc60946g00009 444 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Stsc60946g00009 444 PANTHER WDSAM1 PROTEIN 28 426 IPR045185 GO:0061630
Stsc60946g00009 444 SUPERFAMILY ARM repeat 153 420 IPR016024 -
Stsc60946g00009 444 SUPERFAMILY RING/U-box 27 106 - -
Stsc60946g00009 444 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Stsc60946g00009 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60946g00009 Stsc-Chr60946 29862 31468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60946g00009 26 444 U-box Gene Family AT5G37490 45.221 4.98e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60946g00009 - - gmx:100790182 577.785