Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60946g00001 ATGAAAAGAAACATTGATCTTGAAGTTGAAGCCTTGGCCGAACATGAATCCGAAGTTTGCAGCCAGGTTGCATCCAGTGTCTCTACTCAAGAAGCCTCTCCAATCCCGGTTCATCCGAATTCGGAAGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAATGAGTTAGTAGCAACAAGAGATTCAATAGGATTCTCATTCTCAAGCACTACTAGTGAGAGCAGCAATGAGCCTGCCTCTCAGACCACAGAATCCACCGAGGGGTCTCGAATCTTCCCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAGAATGCTCACAAGAGGGAAAGGACAATGGCAAAAAGGGCCATGAGAATGGGATTTTTCTCTGATAAGTATGCAAGTCTAGCTTCTCTGCCTCTGCATGGCTCTTTCAGGTCTTTAGGAATAAAGGCTCATTCTTCTTCTACAATTCACCATGTGAGATTGAGGCCTACTCCTGAGATGAAAAGCAATGCAAGATTTGAGCAAGGATATGTTGGCCTTCCAATGTTCTTGGAGGATGATGACTCGGAACTGGTGTGGCCGGGTAGTTTTCGCCACGACGGAGATGCCGGCGAAAATAGCAATCATCAGGAGTTCATACTGACTGGAAATCCAAGTTTGAGTTTCACTGAGGTGAGTCCACCAGAAGAAGACATTGAGAACTCAACACCAGATTTGACATTGAAACTTTAA 744 0.4489 MKRNIDLEVEALAEHESEVCSQVASSVSTQEASPIPVHPNSEAISLDLTLNFKNNELVATRDSIGFSFSSTTSESSNEPASQTTESTEGSRIFPCNYCQRKFFSSQALGGHQNAHKRERTMAKRAMRMGFFSDKYASLASLPLHGSFRSLGIKAHSSSTIHHVRLRPTPEMKSNARFEQGYVGLPMFLEDDDSELVWPGSFRHDGDAGENSNHQEFILTGNPSLSFTEVSPPEEDIENSTPDLTLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60946g00001 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Stsc60946g00001 247 SUPERFAMILY beta-beta-alpha zinc fingers 89 121 IPR036236 -
Stsc60946g00001 247 FunFam Zinc finger protein 2 69 139 - -
Stsc60946g00001 247 MobiDBLite consensus disorder prediction 228 247 - -
Stsc60946g00001 247 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Stsc60946g00001 247 Gene3D Classic Zinc Finger 69 138 - -
Stsc60946g00001 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 180 IPR044246 GO:0009788
Stsc60946g00001 247 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60946g00001 Stsc-Chr60946 1944 2687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60946g00001 74 247 C2H2 Transcription Factor Family AT1G66140 48.515 6.53e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60946g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60946g00001 - - gmx:100794851 326.25