Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60945g00004 ATGTTTCCTTCTACTACTTACAGTTACAGCACTGGCCCTTACCCTTGCTTCCCTTCATCTTCTTCTTCGTACCCTCTTTTTCCCTTTCTCAACCCTGAGAATAATAATGCTTCTTCTTCTTCTGCAACAACCACCACCGCTAACAATAATAACAATAATCTCCTTCATGATCCATCACTCTGTGTTCCTTACATTCCAATCCCGGACACGCTGAACAATTTGGCAACCGTTGTAGATAACACCAATAATCTTGCTTCATCATCAATGCCTAAACAACAAGAACTCAATGGCGCCGGGGGAGGTCATCACTACGGCATATCCTGTTTGCTGGTGAAGAAGCCGGTGGCGCCGCCGAAGAAAGATAGGCACAGCAAGATTTACACGGCTCAGGGGCTGAGGGACCGTAGGGTGAGGCTGTCGATCGAGATCGCGCGAAAGTTCTTCGATCTGCAGGACATGCTAGGGTTTGATAAGGCCAGCAACACGCTCGACTGGCTCTTCACCAAGTCCAAGAAAGCCATGAAAGAGCTTGCAAGGAGCAAGAACAACCACAGCGCCAGCGACGAAGCAGCCAGTGGCGGTGCCAATAACAAGAGTTTTCCCTCATCCTCTGACTGCGACGAAGATGACGACTTTGAAGTTCTTTCTCAAAACAACAAGCACCGCCACCAAAGGTCAAAAGGCAGGGAAAGGAAGATGAAAAGTTCAGAGAAGGAAGGAAGTGGTGGGTGTAATGTAAGGGCAAAGATAAAGGAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGAGAAAGAACCAGTAACAAGATGTGCAACAACAGCATAATAGGAAACTCTTGTTCTTCTTCTGGGAAGGTTCTAGAATTAAAGAAAAAATGCCCTGCACCTTCTGAAAACCCTCATCATCAATTGCTTCACACTACTCATCATGGTGGTGAAGTAGCACAAACTAGTGGAGATGATTTTAATGTTATTGAGGAATCCATTGTTATCAAGAGGAAGCTGAAGCAGCCATCTATGATGTCGTCATCATCTTCGCATCACCACCACCAATTAAACCTTCCAATCCCTAATAATAAAGAAGCAAGTTTCAACAACAGTGATAATAATTACCACCCAGCTGCACCAAACTACACCAATTTGTCACCAAATTGGGATAATAATGCTGCTAGTAATAATAATAATAATAACCGTTCCAACTTCTGTGCAATAGCCAGCATGAATCTATCTACAGGGCTACAAATCTTTGGAAAGTCATGGGAAGAATGCACCAATCCACGTCTACACTAG 1287 0.4437 MFPSTTYSYSTGPYPCFPSSSSSYPLFPFLNPENNNASSSSATTTTANNNNNNLLHDPSLCVPYIPIPDTLNNLATVVDNTNNLASSSMPKQQELNGAGGGHHYGISCLLVKKPVAPPKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAMKELARSKNNHSASDEAASGGANNKSFPSSSDCDEDDDFEVLSQNNKHRHQRSKGRERKMKSSEKEGSGGCNVRAKIKESREKARARARERTSNKMCNNSIIGNSCSSSGKVLELKKKCPAPSENPHHQLLHTTHHGGEVAQTSGDDFNVIEESIVIKRKLKQPSMMSSSSSHHHHQLNLPIPNNKEASFNNSDNNYHPAAPNYTNLSPNWDNNAASNNNNNNRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60945g00004 428 MobiDBLite consensus disorder prediction 339 391 - -
Stsc60945g00004 428 Pfam TCP family transcription factor 119 271 IPR017887 -
Stsc60945g00004 428 MobiDBLite consensus disorder prediction 230 248 - -
Stsc60945g00004 428 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Stsc60945g00004 428 ProSiteProfiles R domain profile. 251 268 IPR017888 -
Stsc60945g00004 428 MobiDBLite consensus disorder prediction 178 248 - -
Stsc60945g00004 428 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 382 IPR005333 GO:0003700
Stsc60945g00004 428 MobiDBLite consensus disorder prediction 184 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60945g00004 Stsc-Chr60945 28942 30538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60945g00004 111 270 TCP Transcription Factor Family AT1G67260 44.767 3.13e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc60945g00004 TCP 8.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60945g00004 - - gmx:100801549 327.405