Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60945g00002 ATGAATTCAAGGAGTTTTAATCTTGGGAACACCTGCAGACAAATGCCCAGACATTCTCCATCATTTGCACCAGTCTTGCCTCAGGATGGAGATATTCATTTGAACCAGCACTATGTAAGGAATCAAGTAGGTTTCTTGACAAACTGGAAGGAGCATCCCAGAATCCGCCACTGCCGTCTTTTTATTGCAAGTAAAATCAAGACATTGCTCTGCTCCCAAGGAATTGATGAGAAGTCGGCATCAGAGATGGCAGCTATTGTGGAATTCTGGCTATTTTTTTGTGCTACTTCAGAGGAGGAGTATATGAACCAGCAGACATTGAGACAGCGAATCCAAACTGAGTTTCAGAGGCTCTTCAGTTTCAATAGCACGAACAATTCCACTTCACTGCATGTCCGGTCTATTGGATGTCTAGCTGAACCTACTTTCCAAAATTTGGCTAGTCCTAATATTGTTCATGAGCCAGTCGGCATTGATAATAGAGATTGTTTGGGGACTATCCAAAAAAGTGAACCTAGGGTTCTTCTAACTACCATGGGAAAATCTCCTCTGACTGGATCTTTAAATTTGTTCTCCAATTTGCAAGTCTCAAGGGAAACACCAGAAGCCTCCAATACTTTCCCTGGCATGAGATCTAGCTGTGAGGATTCAAGCCTAAGGGAGAATCACCACCAGAACTTGGATTTTCTTCAGAATTCTGAACATTTTATGCAGCCATATGAGCTTTGTGGCAATGTTTCTATCGCTCAGACTAGTTCATGTTTTGTTGATCAAGGCCAGCATTGCTATCCAATGCTAGGAAATAAAACATTGAACCAGCCTCAGATTCCTACAAGACTTCTCACTGGGGTTGAACAGTTCCCTTCAGCAAGCTCAGCTGGTCATTTCTGTTCAGACAGTAGTTTGAAAGTTCCAGTTGAACAGAAGATCTTGCTTGAATATTCTCGGTACAAGAACTTAAACAGTGTTTCAGGAGATAATCCAATTTCGTTTGCTAATTATCTACATTCAACAGTTTGTAGCAATGGGAGGTGTATCTGTGACCAGGCTATCATGCTGTCTTGGCATTTGAAAAACTGTCAGCATGATCATTGTCAAATATGTTCCACCTGGAGATTACAATGGGCCACTGGAACACCTGAGTCTCATTCGGAACATACAAATAGCATGATTGTGGATTCTGTTGAAAAAGATATTAATGCTTCTTCTGGTAACTCTGACGCTGTGCCACCACCTACCAAGAGACTAAAAGCGGATTTTGCCAATACAGTTTCTGATCCATTTTCTCAAAAGATGGGTGACCCTTTTTTTTCTATAGGACTTCCACAGTTGCAACAACAACCAGAGTCTCCCTATTCTTCTATATATTCTGAAGTTACATCATGCAGTGTGGAACATTTTACAAATCCTGTTCTTGATTCTGTGATTAGTGAGATGAAGACCAGTACAGTTGATGGCACCCCCAGAGAGACTTACGAAAGTAACAATATTTCCTCCAAAGACTTAGGAGGTGACCATATATCAAAGGAGTCAAAAGAAAAAGACCATGGTGTTACAGCGTGCAGTAATTTAAAGGGAAATGTCATTAATGAGATAAAGAACATATCAACTGATGACATAGTCTGGCAGACTTTCAATAGGGAAAACATTATCTCTGAGGGCTTAGAAGCTGATCATATATCAGACGTGTTTAAACCTAATGATGATCTTGTTACAACAAGAAGTAACATAAATGAAAATGTTGTTAGTGAGATAAAGAGCAGTGCGGCTGATGATAGAGATGGGCACACCTTAAATATTGATAATATTCCCTCTGAAGTCTTAGAAGCTGATCATATATCTGAGGAGTCAAAACCATTAGATCATGATGTGACAACCAGCAGTAACTTAAAAGAAAATGCCGTTATTTTGAATTCCAGTATGCACACTCTCTGCGAAGCTCCTGCTGTTGAAGATAAAGAAGATGTACAAGCCAGAATTGAGTTCAAACCGGGTGCAAAAAATTCTGAGGAGAAAGTCATTGAGTTGAAAGATCAACAACAAAAGGAAACAAAGTCTTCAAATAGTGTCTCCTTAACTGAGTTTTTTACAAGCGATCAGATAAAGGAGCACATTATGAGTCTCAGAATGCAATTTGGTCAGGGTTCAACTGAGGAAGAAAGCAGAAGTGCTGCTAATGCATGCCAATTATGTGGATCCATCACATACAATGGGATATCTGTTTCCAAGGAACTTCTTGATAAGAAGAGAAATGATGAAGTACTGGAAGAATCATGGGTCCAATGTGATAATTGCAAAGGATGGCAGCATCAAGTATGTGCACTTTATAACAATAAGAGTGATTTGGACTCCAGTGCTGAGTATATATGTCCCAAATGCCGCATAAAGGATATCGAAAATGGAACGCATGTACCCTCACCAAAGTCTGCCATTTATGGTGCTAAGGATTTGCCAAGAACTATGCTTAGTGACCACATAGAGAAAAGACTTTTCAAGCGTCTCTTGCAAGAGAGAGAAGAATGGGAAAAAGAAAAAGGGTTTTCAGCTCCTGATGAGTTTCTTGCAGTAGAAGATCTTTCTGTTCGAGTAGTATTATCTGTTGACAAACAATTGAGAGTGAATAAGCAGTTTCTGGACATTTTTCCAGTGGAGAATTATCCTGCCGAGTTCCCCTACAGATTGCAAGTTATTCTTTTATTTCAGAAGATTGAAGGAGTAGATGTATGCCTCTTTGGAATGTATGTCCAGGAGTTTGGCTTGGATTGTGGCTATCCGAATCAGCGTTCAGTATATATTTCATATCTGGATTCTGTTAAGTATTTTAGGCCGGAAAGAGAGACTGCGACTGGAGAGGCTCTTCGCACCTTTGTTTACCATGAAATATTGATTGGATATCTTGACTATTGCAAGAAACGAGGCTTCACAACTTGCTATATATGGGCCTGTCCTCCTTTGAAGGGGGAAGATTATGTACTGTATCATTCAATGCTAAGAAAGGCAGCTGAAGAAAGTATTGTTGTTGGTGTAACCAACATATATGAACATTTCTTTCTTCCTGCGGGAAAATTTGACTCCAAGGTGACAGCTGCTCGGTTGCCATACTTTGATGGAGACTTCTGGTCTGGTAATGCTATGGATCTTGCAAGGAAAATTGAGCAAGAGTGTGGAGGAGATTATGAGAAGACCTTGAAGGAACAAGTAACGAAAAGAACCTTAAAGACCATGGGATATGTAAATCCTTCAAAGGGCAGTGCCAAGGACATTCTGGTGATGATAAAGTTGGGCCAAACTATGTTATCTTTCAAGGAAGACTTCATGCTAGTTCACTTGCAATATGAATGCATGCACTGCCATGAAGTGATGGTGTCTGGAAGGCGATGGTTTTGCACTGAATGCAAGAATTTCCAAGAGTGTGAAAGATGCCACAGCGCTGACTCTCACACTTCAGCTAGTGGGGAGAAGCATACATTATCTCAGGTCCTCATGGATGATGTCCCTTTTGATACCAAGGAGACCGACACCGTCCTTGATAATGGGTTATTTGAGAATAGGCCTAACTTTCTGATCTTCTGTCAGAAGAATCAGCTTCAGTTTGACACACTCCGCCGTGCCAAGTATTCCTCCATGATGATCCTATATCATCTACGAGCTCCTAATATTGCATCAGTTGGCAAAACATGTAGCATTTGCTGTAAACACAATCTGTCCCAGCACAGCTGGAAATGTGATATTTGCCCAGAGTTCACTGCCTGCTCAGCATGCTATAAAGAGAGAGGTGCTGATTGCCATCCACACAAGTTGAGTCGAACCTCTTCAACAGCAATGTGTCAGTCAGGGAATCTAGAATTGATGGAAAACTCAGCAATGATTCAGAAACTGCTGAATATTTTACAGCATGCCTCTCAATGTCGGTCGACTAAAACTCAACCTTGCTCTTACCCGAACTGTCGTCAAATTAAAATGATGTTCTATCATGCCAGTAAGTGCACTGTTCGGGTTGCTGGGGGCTGCCAAATCTGTAAGAAGGCATGGCTGTTATTAACTCTGCACTCGAGGAATTGTAGAGACTCGCCATGTTTCGTCCCGCGTTGCATGGATCTGAAGAAGCATGCAGAATGGATAGATATGCAATTCGAATCTCGGCGGAGAGCTGCAGTTGTGGAAAGCATCAGAGGTCAATGA 4182 0.411 MNSRSFNLGNTCRQMPRHSPSFAPVLPQDGDIHLNQHYVRNQVGFLTNWKEHPRIRHCRLFIASKIKTLLCSQGIDEKSASEMAAIVEFWLFFCATSEEEYMNQQTLRQRIQTEFQRLFSFNSTNNSTSLHVRSIGCLAEPTFQNLASPNIVHEPVGIDNRDCLGTIQKSEPRVLLTTMGKSPLTGSLNLFSNLQVSRETPEASNTFPGMRSSCEDSSLRENHHQNLDFLQNSEHFMQPYELCGNVSIAQTSSCFVDQGQHCYPMLGNKTLNQPQIPTRLLTGVEQFPSASSAGHFCSDSSLKVPVEQKILLEYSRYKNLNSVSGDNPISFANYLHSTVCSNGRCICDQAIMLSWHLKNCQHDHCQICSTWRLQWATGTPESHSEHTNSMIVDSVEKDINASSGNSDAVPPPTKRLKADFANTVSDPFSQKMGDPFFSIGLPQLQQQPESPYSSIYSEVTSCSVEHFTNPVLDSVISEMKTSTVDGTPRETYESNNISSKDLGGDHISKESKEKDHGVTACSNLKGNVINEIKNISTDDIVWQTFNRENIISEGLEADHISDVFKPNDDLVTTRSNINENVVSEIKSSAADDRDGHTLNIDNIPSEVLEADHISEESKPLDHDVTTSSNLKENAVILNSSMHTLCEAPAVEDKEDVQARIEFKPGAKNSEEKVIELKDQQQKETKSSNSVSLTEFFTSDQIKEHIMSLRMQFGQGSTEEESRSAANACQLCGSITYNGISVSKELLDKKRNDEVLEESWVQCDNCKGWQHQVCALYNNKSDLDSSAEYICPKCRIKDIENGTHVPSPKSAIYGAKDLPRTMLSDHIEKRLFKRLLQEREEWEKEKGFSAPDEFLAVEDLSVRVVLSVDKQLRVNKQFLDIFPVENYPAEFPYRLQVILLFQKIEGVDVCLFGMYVQEFGLDCGYPNQRSVYISYLDSVKYFRPERETATGEALRTFVYHEILIGYLDYCKKRGFTTCYIWACPPLKGEDYVLYHSMLRKAAEESIVVGVTNIYEHFFLPAGKFDSKVTAARLPYFDGDFWSGNAMDLARKIEQECGGDYEKTLKEQVTKRTLKTMGYVNPSKGSAKDILVMIKLGQTMLSFKEDFMLVHLQYECMHCHEVMVSGRRWFCTECKNFQECERCHSADSHTSASGEKHTLSQVLMDDVPFDTKETDTVLDNGLFENRPNFLIFCQKNQLQFDTLRRAKYSSMMILYHLRAPNIASVGKTCSICCKHNLSQHSWKCDICPEFTACSACYKERGADCHPHKLSRTSSTAMCQSGNLELMENSAMIQKLLNILQHASQCRSTKTQPCSYPNCRQIKMMFYHASKCTVRVAGGCQICKKAWLLLTLHSRNCRDSPCFVPRCMDLKKHAEWIDMQFESRRRAAVVESIRGQ 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60945g00002 1393 Gene3D TAZ domain 1282 1390 IPR035898 -
Stsc60945g00002 1393 SMART KAT11_2 847 1121 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc60945g00002 1393 ProSiteProfiles Zinc finger PHD-type profile. 725 796 IPR019787 -
Stsc60945g00002 1393 ProSiteProfiles Zinc finger TAZ-type profile. 1283 1367 IPR000197 -
Stsc60945g00002 1393 SUPERFAMILY RING/U-box 1094 1148 - -
Stsc60945g00002 1393 MobiDBLite consensus disorder prediction 482 502 - -
Stsc60945g00002 1393 ProSitePatterns Zinc finger PHD-type signature. 728 793 IPR019786 -
Stsc60945g00002 1393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 746 793 IPR013083 -
Stsc60945g00002 1393 SMART zz_5 1221 1266 IPR000433 GO:0008270
Stsc60945g00002 1393 SMART zz_5 1108 1151 IPR000433 GO:0008270
Stsc60945g00002 1393 Pfam PHD-finger 755 795 IPR019787 -
Stsc60945g00002 1393 ProSiteProfiles Zinc finger ZZ-type profile. 1109 1165 IPR000433 GO:0008270
Stsc60945g00002 1393 Gene3D - 1223 1273 IPR043145 -
Stsc60945g00002 1393 Gene3D - 1105 1161 IPR043145 -
Stsc60945g00002 1393 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 811 1220 IPR031162 GO:0004402
Stsc60945g00002 1393 Pfam Histone acetylation protein 857 991 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc60945g00002 1393 SMART PHD_3 727 794 IPR001965 -
Stsc60945g00002 1393 SUPERFAMILY TAZ domain 1289 1368 IPR035898 -
Stsc60945g00002 1393 SMART TAZ_2 1284 1365 IPR000197 -
Stsc60945g00002 1393 MobiDBLite consensus disorder prediction 482 504 - -
Stsc60945g00002 1393 PANTHER CBP/P300-RELATED 727 1390 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc60945g00002 1393 Pfam TAZ zinc finger 1290 1364 IPR000197 -
Stsc60945g00002 1393 SUPERFAMILY FYVE/PHD zinc finger 756 796 IPR011011 -
Stsc60945g00002 1393 SUPERFAMILY RING/U-box 1204 1265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60945g00002 Stsc-Chr60945 3860 11679 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Stsc60945g00002 HAT_KAT11 1.9e-20 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60945g00002 K04498 - gmx:102664049 1144.41