Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60943g00003 ATGGGATCCAATGGTGAATACGATGATTCCAGCTTGCTTGAATCTCAAACTCACGTATGGAATCACATTTTCAGTTACATAAATTCCATGTCCCTGAAATGCGCAATTGACTTAGGAATTCCAGAAGCCATACATAACTATGGCCAACCCATGCCACTCTCACAACTCATTTCTTCATTACAAATCCATCCCAACAAATCACAATTTGTCCATCGCTTGATGCGAATTTTGACTCATTCGGGCTTCTTCTCTAAACAAATTTCTGTACAAAGCGAGCTCGAATCGAGTTATGCCCTAACCGATTCATCCAAGTTGTTGATTAAAGATCATCCCATGAGTCTTTATCCTTTCTTATCCAGCATGCTTGATCCAATTATAACAAAGCCCTGGTATAAATTGCCAGCATGGTTCCAAAATGATAGTTCCTCGCCGTTTTACATGACACATGGGATGACACTTTGGGATTATGCTGGCACGGAACCAAGGCTCAATAAGTACTTCAATGATGCCATGGCAACGGATACTCCATTTATTACAAGTGTTTTGTTTGAGAGGTGTAAGGGTGTGTTTGAAGGGTTGGAGTCTTTGGTTGATGTTGCAGGAGGCACAGGAACCATGACTAAGGCTATTGCTAAGAAATTTCCAAAAATGGAGTGCACTGTGTTAGATCTTCCACATGTTGTTAATGGCTTACAAGGAAGTGGGAATATAAAATATGTTGGAGGAGACATGTTTGAGTCAATTCCTCCTTCTGATGCCATTTTGTTGAAGTTTATATTGCATGATTGGACTGACGAGAAATGTATCAAAATACTGAAGAATTGCAAGGAAGCAATCACAAGAAGCAAGGAAAGAAAAGGAAAAGTTATTGTCATTGACATGGTAGTGGGTGATGACGATGAAAAGATTGATGATGAAGATAATAAATCAATTGAAACACAACTTTTCTTTGATATGTTGATGATGGTTGAAGTCAACGGAAAAGAGAGAAATGAAAAAGAATGGGCCAACTTAATTTTCTCAGCTGGTTTCAGTGATTACAAGATTTATTTATCAGCTTTGGGATTAAGATCTCTCATTGAAATTTTTCCATAG 1095 0.3826 MGSNGEYDDSSLLESQTHVWNHIFSYINSMSLKCAIDLGIPEAIHNYGQPMPLSQLISSLQIHPNKSQFVHRLMRILTHSGFFSKQISVQSELESSYALTDSSKLLIKDHPMSLYPFLSSMLDPIITKPWYKLPAWFQNDSSSPFYMTHGMTLWDYAGTEPRLNKYFNDAMATDTPFITSVLFERCKGVFEGLESLVDVAGGTGTMTKAIAKKFPKMECTVLDLPHVVNGLQGSGNIKYVGGDMFESIPPSDAILLKFILHDWTDEKCIKILKNCKEAITRSKERKGKVIVIDMVVGDDDEKIDDEDNKSIETQLFFDMLMMVEVNGKERNEKEWANLIFSAGFSDYKIYLSALGLRSLIEIFP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60943g00003 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 359 IPR029063 -
Stsc60943g00003 364 Gene3D - 2 106 IPR036388 -
Stsc60943g00003 364 Pfam O-methyltransferase domain 130 345 IPR001077 GO:0008171
Stsc60943g00003 364 FunFam O-methyltransferase ZRP4 108 364 - -
Stsc60943g00003 364 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc60943g00003 364 Gene3D Vaccinia Virus protein VP39 107 364 IPR029063 -
Stsc60943g00003 364 PANTHER O-METHYLTRANSFERASE 13 348 IPR016461 GO:0008168
Stsc60943g00003 364 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Stsc60943g00003 364 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Stsc60943g00003 364 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Stsc60943g00003 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 364 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60943g00003 Stsc-Chr60943 26336 28227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60943g00003 30 363 Monolignol Biosynthesis Gene Families AT5G54160 34.118 3.90e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60943g00003 - - gmx:100781008 480.33