Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60942g00004 ATGGAAGCGCTTATAAGAGGACGTGGTTTTGCAAATCAACTTCTTCAAGTTGTTGGTGGTAATAAAAATAATCATAATAATGATGATAATGGAGAAGAGGTAATAGCTGAAGATCTTGTGAGAAAGGTACTCAGATCTTTCAACAACACCATTCTGCTTTTGAACGGTGATTCACTTTCTGGTGGTGGCGCTTCCTCGGCAAGTCCAAACCCTAAGAAGTTTGAAGGAAATGGAACCATCAATCATCAATCACCAAGGTACAAAAAAAGGAAAACTTTATCAACACCAACATGGGAGAAGGAAAGCTCAACTCTTATGGATGATGGCTATGCTTGGAGAAAATATGGACAAAAACTTCTAATAAATTCCAATTACCACAGGAACTACTTCAGGTGCAGTTACAAGTTTGATGAAGGTTGTGAAGCAACCAAACAGGTTCAAAGAATTCAAGAGGATCCTCCATTGTACCGTACAACATATCATGGCCACCACACTTGCAAGAACAAATTATTACAAAATTACCCAAATGATGATGAGATGATCCTGATGGATTGTTATTACTGTGATGCTCCTCAACAAGACTCTTGCATGGTGCTTGATTTCAGTAGTGATCCTTTATTAATTTCCCAATAA 633 0.3791 MEALIRGRGFANQLLQVVGGNKNNHNNDDNGEEVIAEDLVRKVLRSFNNTILLLNGDSLSGGGASSASPNPKKFEGNGTINHQSPRYKKRKTLSTPTWEKESSTLMDDGYAWRKYGQKLLINSNYHRNYFRCSYKFDEGCEATKQVQRIQEDPPLYRTTYHGHHTCKNKLLQNYPNDDEMILMDCYYCDAPQQDSCMVLDFSSDPLLISQ 210
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc60942g00004 210 MobiDBLite consensus disorder prediction 60 94 - -
Stsc60942g00004 210 MobiDBLite consensus disorder prediction 60 83 - -
Stsc60942g00004 210 SMART WRKY_cls 106 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60942g00004 210 Gene3D WRKY domain 93 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60942g00004 210 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 32 171 IPR044810 GO:0003700
Stsc60942g00004 210 Pfam WRKY DNA -binding domain 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60942g00004 210 ProSiteProfiles WRKY domain profile. 101 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60942g00004 210 SUPERFAMILY WRKY DNA-binding domain 103 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc60942g00004 Stsc-Chr60942 27715 30627 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60942g00004 1 166 WRKY Transcription Factor Family AT3G56400 35.165 3.25e-30 111
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60942g00004 WRKY 3.5e-23 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60942g00004 - - aip:107610898 171.4