Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60940g00001 ATGTGTTCATCGCTAAAGGGGCAATACGAGATAAGCGAAGAGATAGGCAGAGGTCGTTTCGGCACAATATACCGGTGCTACGACGTCGTTTCAGGGAACCCATACGCCTGCAAAATAATCGATAAATCACTCCTAACAGACGAAACAGACCAACAGTGTATTCTCAACGAACCAAAGCTGATGTCACTCCTAACCCCTCACCCTAACATCCTCACAATCCATAACGCATTTGAAGACCAACACACTCTCTCTCTCATCCTCGACCTCTGCCTTCCCCTCACCCTCCTCGACCGTCTAACTGCCTCAACCGTCACCCCATTCCCCAACGCCTGCCACGTCATCACCCAGCTTCTACAAGCCGTTTCTCACTGCCACCGTTCCGGGATCGCGCATCGGGACTTGAAGCCCGACAATATTCTCTTCGATTCCCGGGACGTCTTGAAACTCGCCGACTTTGGCTCTGCCGAGTGGTTCGGCGGCGACGGCGGGAGTCTCATGACGGGTGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTGTTGATGGGGAGAGAGTATGATGAGAAGGTTGATGTCTGGAGCTGTGGAGTCATACTTTACATGATGCTGGCCGGTGCGCCGCCGTTTTACGGCGACTCTGCCGTCGAGATATTCGAGTCTGTTCTCCGGGCGAACTTGAGGTTTCCGTCCAGAGTTTTCCGGAATGTGTCGCCGGCCGCCAAGGATTTGTTGAGGAAGATGATATGTAAGGACCCTTCTCGGAGGATCTCCGCCGAACAAGCCCTGAGGCACCCATGGATCTTGAGTGGAGGTGAGAGTGAGACAGCTGAACTAACTTGA 840 0.5405 MCSSLKGQYEISEEIGRGRFGTIYRCYDVVSGNPYACKIIDKSLLTDETDQQCILNEPKLMSLLTPHPNILTIHNAFEDQHTLSLILDLCLPLTLLDRLTASTVTPFPNACHVITQLLQAVSHCHRSGIAHRDLKPDNILFDSRDVLKLADFGSAEWFGGDGGSLMTGVVGTPYYVAPEVLMGREYDEKVDVWSCGVILYMMLAGAPPFYGDSAVEIFESVLRANLRFPSRVFRNVSPAAKDLLRKMICKDPSRRISAEQALRHPWILSGGESETAELT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60940g00001 279 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
Stsc60940g00001 279 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60940g00001 279 SUPERFAMILY Protein kinase-like (PK-like) 6 269 IPR011009 -
Stsc60940g00001 279 CDD STKc_CAMK 8 266 - -
Stsc60940g00001 279 Pfam Protein kinase domain 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60940g00001 279 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60940g00001 279 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 270 - -
Stsc60940g00001 279 PIRSF ILK 3 263 - -
Stsc60940g00001 279 FunFam Maternal embryonic leucine zipper kinase 2 275 - -
Stsc60940g00001 279 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc60940g00001 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60940g00001 Stsc-Chr60940 26399 28105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60940g00001 9 273 EF-hand Containing Proteins AT4G04720 41.418 4.14e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc60940g00001 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60940g00001 - K08794 gmx:547707 392.119