Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60939g00005 ATGGTTCAAGGAAGGGTTCTCAGTAAGCTTGGTATTCAAGATGATCATGTCATATCTGGGAAGAGCGTATGTTCTCCTCAACACCAAGATAGGAAGGACAGAAAGAGCGACATCAAGAAGAAAAGCAAAAAAAAGTCAAGGTCAATTATGCTTTCGAATTTGGAAGCTCTTCATGCACCACCTCCAAGGAGGAGCTTATCTCAACCAGTAAAGGAACAACAGCCTCTTCGTGTTCCAACTGCAGCAGCATCATCACTACAAAAGCATAAGCCTTTGTTGAGAATAGATGGATCTCCCAATTATATGAAGCCCACAAGCAGTTCTGATGCAAAAAAGGAGTGTTTCCCGGTGAGTCTTCGAAACACACAAAATGAAAAGAATTTGCTACAAAGATGTTCTAGTAGTTCAAGGGCTAGTTCCTTATCCTGTAAAAAACAAGAAAAACCCTTGACTAGATCATCTAGTTTGAATTTGGTAAGATCATTGACAAAGACTACTACTTTCAAGCCTTATAAGACAAGTCCTAGAAAATCCACCACAGCAATTTTGCATGCAGAAATGAATCCACCAGTGAGAGCCACTTGTTCTTCAACTTTGAAAGACTCTAGGTTCCCTGCATACCTCACACTTAACCATGGGGGAAATGAATATGAGGGAATTTCAGTCATGAAAGTTTGCCCCTACAAATATTGCTCTCTCAATGGTCACTATCCCACTACCTTGTCTTCATTGAAGAGCTTTGTCTCAACAAAGAGGCGTACTCTGAAAACCCAGAAGTGTATGAAGCTGGAAACACTGAGCCCTCAAAGATTGAAGATGCAGTGTCAGACGGACAACAATGATATTGAGCAGAATCTCATGGATGGGAAACATGCACATAATGAAGCTGATAAAGGTAATCCAATAACCATGCCCTTGGCACAAAAAAGTACGATGGATTTCTTTATTGAAATATATGTTAAGATAAAGGAAGGAGCTGATGACATGGATAAATTTTACTCTGCTGAAGACCTTGAAGATCAACATGACATCAAGTCTGAGACTGAAGAGGATGGAGTCAAGTGTGTTATTCAAACTCTAAACCACGCTCTTCCGAAGTGTCAAATTGATCATGAAGATGATTTCAGAGACTGGTTTGCTCCTGCTGCAATTGAAGCAGATAAAAAAGGGAGCTCTCACCAAGAAACGAATGCTGCAGTTGCAGATGTAAACTACTCAACTAGCTGGTTTGGTGAAAAAATATGTATGGGAAGTTATTCCAGTGAAGCTAGCTGTGATGGTGAACAGATGCATAATATTGAACTTGATGATTGTCATTCCCAGGATACTGAAAATGTTGAATTGAATGGTTCTGGTTACCAGGATACTGATATGCAGTGGAAGGAGGAGGAGCAGTTCTTTTCATTTGGAAATGGAGAAAACATTGATTCTTCTATCTTCACAGGGGAGGAAAGTGACTCAAACTTTGAGTCCTTATCAGATAGTTCACATGATGTTTCTGTGATGTGGTTAGATGACATACTTGCCAACCATCACGCAGATATTCTTGTAGAAGGAACACTCAAAGAAGCCAATGATGAAAAAGGTACCTATTTTGAAGCACAATCTCATGGCTCTAATTCTGTTTGGGAAGGTACATGTGAAAGCATGGAGCTTGAGACTCAAGAAAATGATTACCTGTCCAATGGCATAAGTTATGTTCAACTTCCTCCAGCAGACAATGAAGCATTTCAGCACCTCACAGATGTAGATGATAGAGTAAATGAAAACTATGTAACAGAAAATTGCAAGGTTGAGGAGAGCTATGAAGATAGCAGCAGAAGCCTAGAGAATAATGATGAAGGCATTAGCCAAGACAACCAAATTCATCCAACAGAGGTACCAGAAGAAAGCAATACTGTCGTTCAGGACCAAGAACTATTGGAGGAAGATCAAGGTAACACTAGTAATTTCCAGTGCACAAGCTGTATAGGTGGTGAAGATCTTAACACAAGCAAGAAGTGGCCATGGAAAACAAAGCGCAAGAGACTGGAGCAAGATGATGAGCAAATGAGAACGATTAAACCGCGAAAACCAAATTTCCTCCCCTTGGTTCCTGAACCAGAGCCAGAAAAGGTTAGCCTGAAGCATCAATTTATGGATGAAAGAAAAGATGCCGAGGAATGGATGCTTGATTATGCACTCAGACAAGCTGTCACACAACTTGCTCCAGCTAGGAAGACGAAAGTGGCTTTGCTCGTTGAAGCTTATGAAACAGTAATGTCACTACCTAAATGTGAAAGCCACAATTCACCCTTTGCTCATGCAAGACCTATTCAATCTTGTAGCTGA 2331 0.405 MVQGRVLSKLGIQDDHVISGKSVCSPQHQDRKDRKSDIKKKSKKKSRSIMLSNLEALHAPPPRRSLSQPVKEQQPLRVPTAAASSLQKHKPLLRIDGSPNYMKPTSSSDAKKECFPVSLRNTQNEKNLLQRCSSSSRASSLSCKKQEKPLTRSSSLNLVRSLTKTTTFKPYKTSPRKSTTAILHAEMNPPVRATCSSTLKDSRFPAYLTLNHGGNEYEGISVMKVCPYKYCSLNGHYPTTLSSLKSFVSTKRRTLKTQKCMKLETLSPQRLKMQCQTDNNDIEQNLMDGKHAHNEADKGNPITMPLAQKSTMDFFIEIYVKIKEGADDMDKFYSAEDLEDQHDIKSETEEDGVKCVIQTLNHALPKCQIDHEDDFRDWFAPAAIEADKKGSSHQETNAAVADVNYSTSWFGEKICMGSYSSEASCDGEQMHNIELDDCHSQDTENVELNGSGYQDTDMQWKEEEQFFSFGNGENIDSSIFTGEESDSNFESLSDSSHDVSVMWLDDILANHHADILVEGTLKEANDEKGTYFEAQSHGSNSVWEGTCESMELETQENDYLSNGISYVQLPPADNEAFQHLTDVDDRVNENYVTENCKVEESYEDSSRSLENNDEGISQDNQIHPTEVPEESNTVVQDQELLEEDQGNTSNFQCTSCIGGEDLNTSKKWPWKTKRKRLEQDDEQMRTIKPRKPNFLPLVPEPEPEKVSLKHQFMDERKDAEEWMLDYALRQAVTQLAPARKTKVALLVEAYETVMSLPKCESHNSPFAHARPIQSCS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60939g00005 776 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 755 IPR044681 GO:0005516
Stsc60939g00005 776 MobiDBLite consensus disorder prediction 18 115 - -
Stsc60939g00005 776 MobiDBLite consensus disorder prediction 594 610 - -
Stsc60939g00005 776 MobiDBLite consensus disorder prediction 611 633 - -
Stsc60939g00005 776 SMART CaM_binding_2 643 755 IPR012417 GO:0005516
Stsc60939g00005 776 MobiDBLite consensus disorder prediction 67 81 - -
Stsc60939g00005 776 MobiDBLite consensus disorder prediction 594 633 - -
Stsc60939g00005 776 Pfam Plant calmodulin-binding domain 665 755 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60939g00005 Stsc-Chr60939 18330 21308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60939g00005 682 776 Calmodulin-binding Proteins AT2G38800 51.579 1.66e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60939g00005 - - adu:107476638 1130.55