Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60935g00001 ATGGTGTCGTTGCTGCCGTATGCAGATGTTGATTCCAGTTTGAGGGACATTGCTGGTTCCGCCGAGGGCTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTTCTCTCTATGTCGTCACCACCCTTTCAGACGATGGTCCGGGGTCGCTTCGCCAAGGGTGTCGTGAGAAGGAGCCACTGTGGATTGTTTTTGGAGTTTCCGGTACAATTAACCTTAACTCTTACCTGAGTGTGTCATCTTACAAGACAATAGATGGCCGAGGACAGAGGATAAAACTAACTGGAAAAGGCTTAAGGCTGAAAGAATGCGAGCACATAATTGTATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAGATAAAACCAAATTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGACGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTGATCGGAGCTGATCCAACTCATGTCGGTGATAGGTGCATTCGGGTGACAATTCATCATTGTTTCTTTGACGGAACACGGCAAAGGCAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAATTGGGCTGTATATGCTATTTGCGCTAGCGTCGAATCCCAGATATACTCTCAGTGCAACATATATGAAGCAGGAGCTAAGAAGAAGACTTATGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGCAGAGGTCTGGCACAATTGTATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCTTAGTTACACAAAACAAAGACGAATCGATGTTCCATCCAAGCGAATACTATCAAACATGGACAATGGAATCAGCTGATCACTCTCTCAGAGAGATTCTCCAGTTATGTTCAGGTTGGCAATCCATTCCTAGGCCAAAAGAATTGATGCCTAATTAA 996 0.4518 MVSLLPYADVDSSLRDIAGSAEGFGRHAIGGLHGSLYVVTTLSDDGPGSLRQGCREKEPLWIVFGVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAVYAICASVESQIYSQCNIYEAGAKKKTYEFYTEKAADKEEQRSGTIVSEGDMLLNGAQPCLVTQNKDESMFHPSEYYQTWTMESADHSLREILQLCSGWQSIPRPKELMPN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60935g00001 331 Pfam Pectate lyase 75 238 IPR002022 -
Stsc60935g00001 331 Gene3D - 7 314 IPR012334 -
Stsc60935g00001 331 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Stsc60935g00001 331 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Stsc60935g00001 331 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Stsc60935g00001 331 SUPERFAMILY Pectin lyase-like 18 302 IPR011050 -
Stsc60935g00001 331 PANTHER PECTATE LYASE 18-RELATED 10 289 IPR045032 GO:0030570
Stsc60935g00001 331 SMART amb_all 47 245 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60935g00001 Stsc-Chr60935 3255 5767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60935g00001 44 327 Polysaccharide Lyase AT3G55140 80.986 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60935g00001 K01728 - gmx:100802068 601.668