Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60934g00008 ATGTTCAAGAAAATTCTAAGTGCAACGGATGCTAAAGCCAAGAGTGGACGTCTTGTGATACCAACCAAAGGTGCTAGGAGTCATTTTCCAGAACTCAATGATGATCAACGATGCATGCGGCTTGATATTTTTGACATCACAGGGAGGATTTGGGAGTTAAGCTACCGATTTTGGGAGAACAATAGAGGCAGAATTTATGTTCTTGGAGGCCTTAAAGAGTATATTTCTATGTGGAAGTGGCAAGTTGGTGAACAAGTCACATTTTATCGAATTGATCCAGAGAACAAATATCTTATTGTAACTGAAAAAGAATTTCCTGCATCATCATCTTAA 333 0.3844 MFKKILSATDAKAKSGRLVIPTKGARSHFPELNDDQRCMRLDIFDITGRIWELSYRFWENNRGRIYVLGGLKEYISMWKWQVGEQVTFYRIDPENKYLIVTEKEFPASSS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60934g00008 110 SUPERFAMILY DNA-binding pseudobarrel domain 1 102 IPR015300 -
Stsc60934g00008 110 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 103 - -
Stsc60934g00008 110 SMART B3_2 2 104 IPR003340 GO:0003677
Stsc60934g00008 110 Gene3D - 1 105 IPR015300 -
Stsc60934g00008 110 Pfam B3 DNA binding domain 5 96 IPR003340 GO:0003677
Stsc60934g00008 110 CDD B3_DNA 1 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60934g00008 Stsc-Chr60934 34740 35274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60934g00008 1 103 B3 DNA Binding Superfamily AT2G30470 39.806 4.50e-20 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc60934g00008 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60934g00008 - - adu:110274859 186.422