Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60934g00004 ATGATGACCCCAAGATCTCAGGCCAGGAGCTCGCTCGAGGAGATGCTTGAGTCTCTCCGCCGAAGGGATGAGGAAGAGAAGCCCAAGGACAAGCCACCGGCATTGCCATCGCGGCCGCCCTCCAGGGCGCGCCTGCCATCGGTGAGAGTGCCTAATAGGTTTGTTTGCCATGGTGATGATGTGAAAGAGGATGGTGGTGTTGGTGGCCGCCACAGGAGGAACGGTAGCTTTGGGTTCAAGAAGGTGAAGGTGGTTGAGGAATCACCTTACATTGTCAAATCAGAAGAAAGCAACTTCAACTTGACTCTTGAAGAATTATCATCATCACCAACATCACCTTTATCATCACAGCTTCAGGTTTCATCAAGCTCTGTTGGTGTTGAAACTGCTGCTCCTGCTTCTGCTTCTGCTACTCCTGCTCCTTCTGATGCATCTGCTTTTGTTTCTGCTGAAGCTTCTGCTTATGCTTCTGCTATTGGTTCTACTTCTGCTTCTGCTGTTCCTTCTGTGGTTTGTTCTCCTACAGGGGAAGTGGAATTGGAGGATGATAATATTGCTTATTTCATCAGAAAGAAACTTCATGTTTGGTGTAGGCAACAAAAAGGAAACTGGGAACTAGGAAGGATACAGTCAACTTCGGAAGAGGAAGCATGCGTTTTGCTTTCAAATGGAAATGTTATCAAAGTGTCCAGATTAGCTCTCTTGCCGGCTAACCCCGATATTTTAGAGGGTGTGGATGATCTTATACAGCTTAGTTACTTAAATGAGCCCTCAGTTCTTCACAATCTAAAGTGTCGTTACACTCAAGATTTGATTTATAGTAAGGCAGGACCAGTTTTAATTGCACTCAATCCCTTCAAAGATGTCCAGATTTATGGAAACGAATACGTAGAAGCTTATAGACAGAGATCTAATGATAATCCTCATGTTTATGCTGTGGCAGATGCAGCTTATAATGAGATGATAAGAGATGAAGTAAATCAATCCATTATCATAAGTGGTGAGAGTGGAGCAGGGAAGACAGAGACAGCAAAAATTGCTATGCAGTATTTAGCTGATCTTGGTGGTGGCAGTTGTGGGATAGAAAATGATGTTCTTCAGACAAATTTTGTACTAGAATCTTTTGGGAATGCAAAAACCTCTAGGAATGATAACTCTAGCAGATTTTCAAGAGTTGTTCAACTGGCCAATGGCGAGAGGTCATACCATAGTGACTGCATGACAATTGATGGTGTTAATGATGCTAAAAAGTTTCAAGGGCTAATGAAAGCGTTGGATATTATTCGAATGTCCAAGGAGGATCAAGAAACCGTTTTCAAGATGCTTGCTGCAATATTATGGCTGGGAAATATTACATTCCATGAAATTGACAATGAAAGTCACATTGAGGTGGTCAATGATGAAGCTGCAACCATTGCTGCCTCACTGATGGAATGCAGTTTGAAGGAGCTAATGGTAACATTGTCTACCCATAAAATTAAAGCTGGCAAGGATACTATTACCAAAAAATTGACGTTGCGACAGGCCATTGATACAAGAGATGCATTAGCAAAATTTATGTATGCAAACTTGTTTGACTGGCTTGTAGAACAAGTCAACAAGGCACTTGAAGTGGGTAAAAGGCGTACAGGGAGATCCATAAGTATCCTTGACATCTATGGTTTTGAATCATTCCAGAAAAACAGCTTTGAACAGTTTTGTATAAATTATGCCAATGAGAGGCTTCAGCAACATTTCAATCGGCATCTGTTTAAACTCGAGCAGGAGGATTATGAATTAGATGGTGTTGATTGGACAAAAGTAGAGTTTGAGGATAATCAAGTTTGTTTGGATCTCTTTGAGAAGAAACCTCTGGGGCTGCTCTCTCTGTTGGATGAGGAATCGAATTTCCCGAGGGCCACTGATCTGACACTTGCTACTAAACTCAAGCAGCACCTCAGTTCTAATCCTTGTTTTAAAGGAGAAAGTGGCAAAGCCTTCAGTGTTCGCCATTATGCAGGGGAGGTCACATATGATACAAATGGCTTTCTGGAGAAGAACAGAGATCCATTGCCATCTGGTTCCATTCAATTGTTGTCATCATGCAGTTGTGAACTGCTGCGGTCATTCTCCCGGGTGCTTGACCAGTCTCAACAAACAAACTCCACACACTTAGGTGCTATGGAGTCAAAAAGGCAAAGTGTTGGCACAAAGTTCAAGGGTCAGCTGTTTAGGTTGATGCATCAGATGGAGAGCACTACACCACACTTTATTCGGTGTATAAAGCCGAATTCGAAGCAAGTTCCCAGCATATATGATGAAGACCTTGTCCTGCAACAGCTCAAGTGTTGCGGAGTTTTGGAGGTTGTCAGGATTTCAAGGGCTGGTTATCCTACTCGAATGACACATCAAGAGTTTGCCAAGAGGTATGGATTATTGGTTTCTGAGGCCAACACATCTTATGATCCGTTGAGTATCTGTGTTGCTATTTTGCAACATTCTAATATCCCCCCAGAAATGTACCAAGTTGGCTACACCAAACTGTATCTTCGATCAGGACAGGTTGGTGTCCTGGAGGATAGGAGAAAACATATTTTACAGGGGATACTTAGTGTTCAGAGAAGTTTTCGTCGTCATCAAGCCCGCAGTACTTTCCGCGAACTCAGGAATGGTGCAACGGTTTTACAATCATTCATTCGCGGAGAAAATGCAAGAAGGAAATATGGTGTTATGATGGAGTCTTCCATAACCATTTCTTCTGAACATGATCAGGAGATTGAGGCAGCCACAGTAATACAATCTGCAATTCGTGGGTGTTTGGCTCGGAAGCATGCTAGTAGCCCTTGTAGGCCAAAGAAACATCATGAGAATTCGAGACAAAGACGAAGGTCACGTACAAAGTTTCCAGAAGTAAAGGATGTGTTGTCCAGAGAGCTGGCTCAGAATCTGCCTTCAGCTTTAGCAGAACTCCAGAAGCGTGTCGTCAAGGCTGAAGTAACTATAGAGCAAAGAGAGGACGAAAATTCTCAATTGAGGGATCAACTAAAAGTGTTTGAGAGCAGGTGGCTCGAATACGAGAATAAGATGAAATCAATGGAGGAGATGTGGCAAAGGCAAATGTCCTCTCTGCAAATGAGTCTTGCTGCAGCTAGAAAGAGCCTTGCCTCAGAGGCTACCAGTGGTCAACATGCAAAACATGATCCCATGACACAATTTGGCTCTGATTCTGAAGACACCACTTCCATGGAATCTCGAACTCCTCGAACACCTGGCATGAGCACACCCTTGAAGTATTCGAGTAGTCTTTCTGAACTCAGAGCAGCAAGAGAGGTTAATAATGGTTGCACAAATTCTGCAGTCAGCAGTCTGGCAAGGGAATTTGACCAGCAGAGACAAGTTTTTGATGAAGAGGCCAAAGCTATGCTTGAGGCTAGATCGGGTAAAAACGGTAACGTGAAATGTTATGATGAATATAAGAAACTTAAGCGTAGGTTTAAGGCATGGAAGAAAGAATACAAGATTAGATTAAAGGAGATAAAAGCAAAGCTTCATAAGAATCCGGAAACGGATAGAGGCAGGCGAAAATGGTGGGGGAAATTGAGTTCAAAAGCACATTCTCTTAGTAGGGAATAA 3612 0.4291 MMTPRSQARSSLEEMLESLRRRDEEEKPKDKPPALPSRPPSRARLPSVRVPNRFVCHGDDVKEDGGVGGRHRRNGSFGFKKVKVVEESPYIVKSEESNFNLTLEELSSSPTSPLSSQLQVSSSSVGVETAAPASASATPAPSDASAFVSAEASAYASAIGSTSASAVPSVVCSPTGEVELEDDNIAYFIRKKLHVWCRQQKGNWELGRIQSTSEEEACVLLSNGNVIKVSRLALLPANPDILEGVDDLIQLSYLNEPSVLHNLKCRYTQDLIYSKAGPVLIALNPFKDVQIYGNEYVEAYRQRSNDNPHVYAVADAAYNEMIRDEVNQSIIISGESGAGKTETAKIAMQYLADLGGGSCGIENDVLQTNFVLESFGNAKTSRNDNSSRFSRVVQLANGERSYHSDCMTIDGVNDAKKFQGLMKALDIIRMSKEDQETVFKMLAAILWLGNITFHEIDNESHIEVVNDEAATIAASLMECSLKELMVTLSTHKIKAGKDTITKKLTLRQAIDTRDALAKFMYANLFDWLVEQVNKALEVGKRRTGRSISILDIYGFESFQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGVDWTKVEFEDNQVCLDLFEKKPLGLLSLLDEESNFPRATDLTLATKLKQHLSSNPCFKGESGKAFSVRHYAGEVTYDTNGFLEKNRDPLPSGSIQLLSSCSCELLRSFSRVLDQSQQTNSTHLGAMESKRQSVGTKFKGQLFRLMHQMESTTPHFIRCIKPNSKQVPSIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFAKRYGLLVSEANTSYDPLSICVAILQHSNIPPEMYQVGYTKLYLRSGQVGVLEDRRKHILQGILSVQRSFRRHQARSTFRELRNGATVLQSFIRGENARRKYGVMMESSITISSEHDQEIEAATVIQSAIRGCLARKHASSPCRPKKHHENSRQRRRSRTKFPEVKDVLSRELAQNLPSALAELQKRVVKAEVTIEQREDENSQLRDQLKVFESRWLEYENKMKSMEEMWQRQMSSLQMSLAAARKSLASEATSGQHAKHDPMTQFGSDSEDTTSMESRTPRTPGMSTPLKYSSSLSELRAAREVNNGCTNSAVSSLAREFDQQRQVFDEEAKAMLEARSGKNGNVKCYDEYKKLKRRFKAWKKEYKIRLKEIKAKLHKNPETDRGRRKWWGKLSSKAHSLSRE 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60934g00004 1203 SMART MYSc_2a 237 857 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 ProSiteProfiles IQ motif profile. 881 910 IPR000048 GO:0005515
Stsc60934g00004 1203 Gene3D - 885 946 - -
Stsc60934g00004 1203 PRINTS Myosin heavy chain signature 327 352 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 PRINTS Myosin heavy chain signature 370 397 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 PRINTS Myosin heavy chain signature 273 292 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 ProSiteProfiles Myosin motor domain profile. 243 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 190 239 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 Gene3D Myosin VI head, motor domain, U50 subdomain 431 562 - -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 14 33 - -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 1 73 - -
Stsc60934g00004 1203 FunFam Unconventional myosin-XIX 558 746 - -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 936 962 - -
Stsc60934g00004 1203 PANTHER MYOSIN 236 1190 - -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 939 955 - -
Stsc60934g00004 1203 Coils Coil 980 1014 - -
Stsc60934g00004 1203 SMART iq_5 857 879 IPR000048 GO:0005515
Stsc60934g00004 1203 SMART iq_5 917 939 IPR000048 GO:0005515
Stsc60934g00004 1203 SMART iq_5 880 902 IPR000048 GO:0005515
Stsc60934g00004 1203 Gene3D Kinesin motor domain 708 788 IPR036961 -
Stsc60934g00004 1203 ProSiteProfiles IQ motif profile. 918 947 IPR000048 GO:0005515
Stsc60934g00004 1203 Pfam IQ calmodulin-binding motif 920 937 IPR000048 GO:0005515
Stsc60934g00004 1203 Pfam IQ calmodulin-binding motif 883 901 IPR000048 GO:0005515
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 55 70 - -
Stsc60934g00004 1203 Pfam Myosin head (motor domain) 245 395 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 Pfam Myosin head (motor domain) 404 844 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc60934g00004 1203 Gene3D - 789 857 - -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 1178 1203 - -
Stsc60934g00004 1203 Gene3D - 563 706 - -
Stsc60934g00004 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 906 IPR027417 -
Stsc60934g00004 1203 CDD MYSc_Myo8 257 844 IPR036022 -
Stsc60934g00004 1203 Gene3D Kinesin motor domain 194 420 IPR036961 -
Stsc60934g00004 1203 MobiDBLite consensus disorder prediction 1045 1090 - -
Stsc60934g00004 1203 ProSiteProfiles IQ motif profile. 860 886 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60934g00004 Stsc-Chr60934 14219 21020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60934g00004 3 1192 Myosins gene family AT5G54280 55.740 0.0 1339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60934g00004 K10357 - gmx:100819335 1576.61