Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60920g00005 ATGTTTCATTCCCATACAAACCTTTCTATTCTCTTCCTCACAACATTCTTCATATTGTTCTTCACAACAAGAGCCAAGATTCACAATAACTGCAACCATAGCTGCGGAAAATATTCCTTACAGTACCCTTTCGGCTTCTCCGATGACTGTGAAATCAAACTAAACTGCACCACCAACAACAGAGTCCAAATTGGAAACCTACAAGTCCAGAACGTGACCTCTGAAAGCATATTCATCACTCTTCCGGCGGAATGCGACCGCCGGAAGGATTCCATAGAGCCTCTATTCGGAGAAAACTATGCTCCANNNNNNNNNNACAGCTTCCTCGTACAAGGCTGCGAACACGAGCTTGGAGGCTGCAACATCCCAATAGAGAGTTTCATTGGAAGCAAGATTGATGAGGTTGAAGGGTGTGATAGTGACAGTAGCAGAAGAAGTGGTAACATTAGTTGCTTCTCGAAACCGCGGAATCAAAAGGAAGGTTCGGATGTTGTGAGTCTTAAGGATTGGGAAGGAATTGGGTGCAAGTGGTTGTTTTCTGCAATTGCTTTTGATAAGAGCAGAGAGGTGTGGGTTCAGTTTCAGGCGGTTGAGTTGGGGTGGTGGCTTCAAGGGTCGTGTGGTATTTGTTCTGAGAATGCGAATTGTGACCAAGTCAATGTCGGAGGAAGTAAGAATGGATTCAGGTGCCACTGCCATGACGGTTTCAGAGGTGATGGATTCAAGAACGGTGCCGGTTGCCAGACAGTTTCTTATTGCAATGGCTCAACACTGAAGTCTGGCAGATGCGTGGAAGGAGTCAAAATTGGTGTCCTTGTTGGAGTTGGTGCCACCCTGGTTGCAGCTCTGTGTCTCGTATGTTATTTCATCCGGCGCCGGGCCAATTGGCTGCGAAAACAAGTCCGAGCAAAGCATATATTACAAGAAGCTGCAGGCAACTCCAGCATCCCTTTCTACCCTTACAAGGAAATTGAAAGAGCCACAAATTTTTTCTCTGATGAAAACAGGTTGGGAACGGGTGCTTTTGGCACGGTTTATGCCGGAAACCTTCACAATGATGAGTGGGTTGCTATAAAAAAGATCAAATATAGGGACACCAACAGTGTAGACCAAGTAATGAATGAGATCAAGCTACTTTCTTCGGTGAGTCATCCGAATCTAGTGCGGCTCCTCGGCTGCTGCATCGAGCAAGGAGAGCAGATACTTGTTTATGAGTACATGCCGAATGGAACTTTGTCACAGCATTTGCAGAGAGAAAGGGGGGGAGTACTTTCTTGGGGAGTAAGGCTCACCATCGCGACCGAAACTGCTAACGCTATAGCATATCTCCATTCTGCAATTGATCCTCCAATTTATCATAGAGATATAAAATCTAGTAACATTCTCTTGGACTATAACTTCCAATCAAAGGTAGCAGACTTTGGCCTTTCAAGGATTGGCATGACTGAGACCTCTCATATCTCGACCGCGCCGCAAGGAACTCCTGGCTATGTTGACCCTCAATACCATCAGAACTTCCATCTTTCCGACAAAAGCGATGTGTATAGCTTTGGAGTGGTTCTGGTTGAGATAATAACCGCCATGAAAGTGGTTGATTTTGCAAGGCCCCGAAGCGAGATTAACTTGGCTGCACTAGCCGTTGATAGGATTAGACAGGGATTGGTAGATGAGATCATAGATCCCTACCTTGAACCACATCGAGATGCTTGGACTCTTTACTCTATTCACAAGGTAGCTGAGCTTGCTTTTCGATGCCTCGCTTTTCATAGCGACATGAGGCCTACCATGATGGAAGTTGCCGAGGAGCTAGAGCACATCAGACGAAGTGGTTGGGCGACTATGGAAGAAACCATATACATGGCTTCACCAGCCATTTCCGCCTGTTCGTCGCCTAGAAACAGAAGCGAGAAGTCAATGGGTAGTATCCGGTTTGAGAGAGCAGGGCAAGAGACTGAGACATTTAGTGTTGTTCCATTGGAGGAGGTAAGGGAGAGCTCCCCAGTTTCTGTGCATGTTGCTTGGTTAAGTGGACCAAGCTCACCCTCAACGAATAGCTTGTTGGGAAATGTAGCTCAGTGA 2079 0.4613 MFHSHTNLSILFLTTFFILFFTTRAKIHNNCNHSCGKYSLQYPFGFSDDCEIKLNCTTNNRVQIGNLQVQNVTSESIFITLPAECDRRKDSIEPLFGENYAPXXXXSFLVQGCEHELGGCNIPIESFIGSKIDEVEGCDSDSSRRSGNISCFSKPRNQKEGSDVVSLKDWEGIGCKWLFSAIAFDKSREVWVQFQAVELGWWLQGSCGICSENANCDQVNVGGSKNGFRCHCHDGFRGDGFKNGAGCQTVSYCNGSTLKSGRCVEGVKIGVLVGVGATLVAALCLVCYFIRRRANWLRKQVRAKHILQEAAGNSSIPFYPYKEIERATNFFSDENRLGTGAFGTVYAGNLHNDEWVAIKKIKYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEQGEQILVYEYMPNGTLSQHLQRERGGVLSWGVRLTIATETANAIAYLHSAIDPPIYHRDIKSSNILLDYNFQSKVADFGLSRIGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPRSEINLAALAVDRIRQGLVDEIIDPYLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIRRSGWATMEETIYMASPAISACSSPRNRSEKSMGSIRFERAGQETETFSVVPLEEVRESSPVSVHVAWLSGPSSPSTNSLLGNVAQ 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60920g00005 692 FunFam Wall-associated receptor kinase-like 14 298 406 - -
Stsc60920g00005 692 SUPERFAMILY Protein kinase-like (PK-like) 312 604 IPR011009 -
Stsc60920g00005 692 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Stsc60920g00005 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Stsc60920g00005 692 FunFam Wall-associated receptor kinase-like 20 407 616 - -
Stsc60920g00005 692 Pfam Protein kinase domain 332 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60920g00005 692 ProSiteProfiles Protein kinase domain profile. 331 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60920g00005 692 SMART serkin_6 331 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60920g00005 692 Gene3D Transferase(Phosphotransferase) domain 1 407 621 - -
Stsc60920g00005 692 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Stsc60920g00005 692 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 675 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60920g00005 Stsc-Chr60920 31014 36763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60920g00005 19 692 Receptor kinase-like Gene Family AT2G23450 55.814 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc60920g00005 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60920g00005 - - gmx:100810861 964.14