Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60911g00002 ATGTCACTCTCACCTTTGTATTCTTTGTTATCCCTCCTCTTTTTCTTCACACCATTACTCCTAGCTCAACCTCCATCTCCCTCCTCCTCTTCTTCTGCTTGCAAGTCAACATTGTACCCTAAACTCTGCCGTACAATACTCTCCACAATTCGAAACTCTCCTTCTGATCCGTACGGTTACGGCAAGTTCTCCGTCAAACAGTCTCTCAAACAGGCCACAAAGCTCGCAAAAGCCTTCAACGGCTTCCTCAACCGCCACAACAACAACCGCCGCCAATCCCATTCGTCTTCGTCTCTAAACAATGCTGAGGTCTCTGCATTCGCAGACTGCAAAGACCTCAACGAGCTCAACGTGGACTATCTCTCGTCCATCTTCGCTGAGCTTAAATACGCCATCAACAATGATAATTCTTCCAACAACAACGGCGCCGCGGAGCTCGTCGACAAGATAGAGAGTTATCTCTCCGCCGTGGCCACCAACCATGAGACATGCTACGACGGGTTGGTGGCCACGAAAGGCGGGATTGGAAACGCGCTCGTGGCGCCGTTGAAGGATGCGACACAGCTGTACAGTGTGTCGCTTGGGTTGGTGAGTGTGGCTCTTGATAAGAACATGAAGAAGAATAATTACAAGACCCGCAAACATGGGCTTCCTAACAAGAACTTCAAGGTCAGGCAGCCACTTGAGAAGCTCATTCAGCTTCTTCGAACAAAGTATAGTTGCAAGAACTTGTGGAATAATTGTACAAGAAGTGAAAGGATTCTGAAAGAAAGCAAAAGCTCAGGGATTCTATTGAAAGATTTTGTGATTGTGAGCCATTATGATAGGAGAGATAACTACAGTTCAATTGGAGAAGCCATTGCTGCTGCGCCAAACAACACAAAGCCAGAAGATGGGTATTTCCTTGTGTATGCTAGAGAAGGGTACTATGAAGAATATGTTGTTGTTCCAAAAGAAAAGAAGAACATTTTGCTAATTGGAGATGGTATCAACAAGACTATCATCACAGGCAACCATAGCGTCGTTGATGGTTGGAGTACTTTCAATTCTTCCACTTTTGCTGTTAGTGGAGAAAGATTTCTTGCGGTGGACGTTACCTTCAGAAACACGGCAGGGCCGGAAAATCACCAAGCAGTGGCGGTGAGGAACAACGCTGACCTCTCCACCTTCTATCGGTGCAGCTTCGAAGGCTACCAAGACACACTCTACGTCCATTCTCTCAGGCAATTCTACCGAGAATGCGATATTTTCGGCACCATTGACTTTATCTTTGGTAACGCAAGAGTAGTTTTTCAGAACTGTAACATTTATGCAAGACAACCAATGGACAACCAAAAGAATGCTGTGACCGCACAAGGAAGAACCGATCCGAATCAAAACACCGGAATCTCGATCCATAACTGCACGATTAATGCAGCACCGGACTTGAATATTTCTTCCACTATGACCTACCTAGGTAGGCCATGGAAGAATTATTCGAGGACGGTGTATTTGCAGTCTTATATTGGTGATCTGATTGAGCCTTCTGGGTGGTTAGAATGGAATGGAACATTTGGGTTAGATACTCTATTTTATGGAGAATTTAATAACTATGGACCTGGTTCTAACACTTCCAATAGAGTTCAATGGCCTGGCTATGTGATCTTGAATGCCACACAAGCTTCCAACTTTACTGTTCTTAACTTTACTTTGGGGAATACATGGCTTCCAGATACTGATATACCCTATACTGAAGGCTTGCTGAATTAA 1749 0.4483 MSLSPLYSLLSLLFFFTPLLLAQPPSPSSSSSACKSTLYPKLCRTILSTIRNSPSDPYGYGKFSVKQSLKQATKLAKAFNGFLNRHNNNRRQSHSSSSLNNAEVSAFADCKDLNELNVDYLSSIFAELKYAINNDNSSNNNGAAELVDKIESYLSAVATNHETCYDGLVATKGGIGNALVAPLKDATQLYSVSLGLVSVALDKNMKKNNYKTRKHGLPNKNFKVRQPLEKLIQLLRTKYSCKNLWNNCTRSERILKESKSSGILLKDFVIVSHYDRRDNYSSIGEAIAAAPNNTKPEDGYFLVYAREGYYEEYVVVPKEKKNILLIGDGINKTIITGNHSVVDGWSTFNSSTFAVSGERFLAVDVTFRNTAGPENHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIFGTIDFIFGNARVVFQNCNIYARQPMDNQKNAVTAQGRTDPNQNTGISIHNCTINAAPDLNISSTMTYLGRPWKNYSRTVYLQSYIGDLIEPSGWLEWNGTFGLDTLFYGEFNNYGPGSNTSNRVQWPGYVILNATQASNFTVLNFTLGNTWLPDTDIPYTEGLLN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60911g00002 582 Gene3D - 269 582 IPR012334 -
Stsc60911g00002 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 199 IPR035513 -
Stsc60911g00002 582 NCBIfam pectinesterase inhibitor domain 2 182 IPR006501 GO:0004857
Stsc60911g00002 582 SMART PMEI_2 25 196 IPR006501 GO:0004857
Stsc60911g00002 582 PANTHER PECTINESTERASE 13 570 - -
Stsc60911g00002 582 Pfam Plant invertase/pectin methylesterase inhibitor 31 195 IPR006501 GO:0004857
Stsc60911g00002 582 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Stsc60911g00002 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 200 IPR035513 -
Stsc60911g00002 582 FunFam Pectinesterase 264 580 - -
Stsc60911g00002 582 SUPERFAMILY Pectin lyase-like 267 579 IPR011050 -
Stsc60911g00002 582 CDD PMEI-like_3 33 198 - -
Stsc60911g00002 582 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60911g00002 Stsc-Chr60911 10869 16486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60911g00002 33 582 Carbohydrate Esterase AT3G10720 60.432 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60911g00002 K01051 - gmx:100816503 876.315