Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60911g00001 ATGTCTTCCTTCAAATCATACGGCAAAGTTGATGAACAAGATCAAATGCTGTACCAAACCCGAATCAAAACCCGAAAGAGAATCATAATCATAAGCCTCTCCTCAATAATCCTCCTTGGTGTTGTTCTTGCTGCTGTGTTTGGAATTCTCAATAATTCTCGAGATGATAATAACTCATCACAACAAAATGGGGGTTCAGCGATTGCCACGTCCGTGAAGGCGATTTGCGACGTGACACTGTACAAGGATTCATGTTACAGGAGCCTTAGCTCTGTTGTGAACTCATCAACTGGGGAGGTTCAGCCAGAGGAGCTATTAAAGTTGTCTATTAAGGTGGCCATAGAAGAAGTGTCAAATGTTGTTAACAAGTATTTCTCTTCTAGTGGAGGGCATAATGGACATTTCCAAGGATTGAATGATTTTGGTAGGGAAAAGGAAGCTTTGGAGAACTGTAGAGAGCTTTTGGATCTTGCAGTTGATCATCTTAAAAACTCTTTGTCTTCTGTTGAAGCCTCTTCCCTTTTTGACATCTTTGATGATCTTCAAACATGGCTAAGTGCTGCAGGTACGTACCAACAAACTTGCATTGAAGGCTTTGATGAAGCAAAACAATCACTAAAAATACTCGCAACAAACTACCTCAAAAACTCAACAGAGTTCGCCAGTAACAGTCTGGCCATCATCACATGGATCAAGAAGGCGGTGGCCGCAACCGCCGTGGTGAGTCAGCCACGGCGACGCTTGCTGATGAGCTCATCATTCCCAGAGTGGCTTCATTCCAATGACAGGAAGCTACTTGGAACAAATAATAATAATAATGATTTGAAGTTGAAAAGAGAGACTATTGTTGTGGCAAAAGATGGGAGTGGGAAATACAAGAGAATCTCTGATGCATTGAAGCATGTTCCAGATAAGAGTAATAAGAGGACTGTGATTTATGTGAAGAGAGGTGTTTACTATGAGAATGTGAGGGTTGAGAAGAACAAATGGAATGTGATGATGATTGGTGATGGCATGACTGCTACTATTGTCTCTGGCAGCCTTAACTTTGTTGATGGCACAACAACCTTTTCAACTGCTACTTTTGGTGTGTTTGGAAAGAATTTCATTGCAAGAGACATGGGTTTCAGAAACACAGCTGGTCCAAAGAAGCACCAAGCAGTGGCACTAATGACAACTGGTGATGAAGCTGTTTACTACAGATGCCACATTGATGCATTTCAAGACACACTCTATGCTCATTCCAATCGCCAATTCTACAGAGAATGCAACATCTATGGCACTGTTGATTTCATCTTTGGCAACTCTGCTGTTGTCTTCCAAAACTGCAACATCTTCCCAAAGCTACCAATCCATGGCCAGCAGAACACAATCACAGCACAAGGCAAAACTGATCCCAACATGAACACAGGTATCTCAATCCACAATTCCAAGATTTCAGGGTTTGGGAACTTGACTTCTGTCCAAACATACTTGGGTAGGCCATGGAAGAATTACTCAACTACAGTGTACATTAGATCCAAAATGGAAGCCATTGTTAGCCCAGGTGGATGGTTACCTTGGGTTGGAAACTCAGCACCAGACACCATATTTTATGCTGAATTTGAGAACTTTGGACCTGGGGCTTCTACTTTAAATAGAGTGAAGTGGAAGGGCTTGAGAGCTATTTCTTTTAAACAAGCTAGCAAGTTCTCGGTGAAGGCTTTTCTTGGTGGCCAAAGATGGATTCCTGCATCTTCTGCTCCTTTTAAGTCTGATCTGTGA 1764 0.4212 MSSFKSYGKVDEQDQMLYQTRIKTRKRIIIISLSSIILLGVVLAAVFGILNNSRDDNNSSQQNGGSAIATSVKAICDVTLYKDSCYRSLSSVVNSSTGEVQPEELLKLSIKVAIEEVSNVVNKYFSSSGGHNGHFQGLNDFGREKEALENCRELLDLAVDHLKNSLSSVEASSLFDIFDDLQTWLSAAGTYQQTCIEGFDEAKQSLKILATNYLKNSTEFASNSLAIITWIKKAVAATAVVSQPRRRLLMSSSFPEWLHSNDRKLLGTNNNNNDLKLKRETIVVAKDGSGKYKRISDALKHVPDKSNKRTVIYVKRGVYYENVRVEKNKWNVMMIGDGMTATIVSGSLNFVDGTTTFSTATFGVFGKNFIARDMGFRNTAGPKKHQAVALMTTGDEAVYYRCHIDAFQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVFQNCNIFPKLPIHGQQNTITAQGKTDPNMNTGISIHNSKISGFGNLTSVQTYLGRPWKNYSTTVYIRSKMEAIVSPGGWLPWVGNSAPDTIFYAEFENFGPGASTLNRVKWKGLRAISFKQASKFSVKAFLGGQRWIPASSAPFKSDL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60911g00001 587 CDD PMEI-like_3 74 233 - -
Stsc60911g00001 587 FunFam Pectinesterase 68 232 - -
Stsc60911g00001 587 Gene3D - 277 587 IPR012334 -
Stsc60911g00001 587 FunFam Pectinesterase 276 587 - -
Stsc60911g00001 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 232 IPR035513 -
Stsc60911g00001 587 PANTHER PECTINESTERASE 37 577 - -
Stsc60911g00001 587 Pfam Plant invertase/pectin methylesterase inhibitor 71 227 IPR006501 GO:0004857
Stsc60911g00001 587 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Stsc60911g00001 587 Pfam Pectinesterase 282 572 IPR000070 GO:0030599|GO:0042545
Stsc60911g00001 587 SUPERFAMILY Pectin lyase-like 280 583 IPR011050 -
Stsc60911g00001 587 SMART PMEI_2 67 227 IPR006501 GO:0004857
Stsc60911g00001 587 NCBIfam pectinesterase inhibitor domain 61 231 IPR006501 GO:0004857
Stsc60911g00001 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 231 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60911g00001 Stsc-Chr60911 7545 10449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60911g00001 7 587 Carbohydrate Esterase AT3G10710 53.173 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60911g00001 - - gmx:100811152 803.512