Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60908g00003 ATGGGAAGGTCACCATGTTGTGATGAGAGCAGCGGTAATGTAAAGAAAGGGCCATGGACGGAAGAGGAGGATGAGAAGCTGATTGATTACATAAAGAAACACGGCCATGGAAGTTGGAGAACACTTGCAAAGCGTGCTGGTCTCAACAGATGCGGTAAGAGCTGCAGACTCAGATGGGCTAACTACCTCAGACCTGATATCAAGAGAGGCAAATTCACCCAAGATGAGGAAAGGATCATCATCAACCTTCATTCTGTTCTTGGCAACAAGTGGTCAAAGATTGCAACGCATCTTCCGGGAAGAACTGATAATGAGATAAAGAATTTCTGGAACACTCATATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAGACACACAAGCCTAGGACGGATTTCAGACACCTCATGAATCTCACACAGTTGCTTGGAATCTCATCAAATATGGGGAATCCTATGATGAACACTTGGGGGGCCAACAACCCTAATATTGGTCTACAAGGAGATGTTACTCAACTGGCCAAGCTACAATTGCTGCAGAATCTGTTGCAAATTATGAACAGCAACACATTTGCTAACATGGGGAATAATAACAATAACCCTAATTACCTCTTAGGTAATCCCAGCTTCAATAATAATGCGTATCTGAATAATGGATCAAACACTCTCCAAGCTGTTGCAAACCATGGCGCTCTATTCCCTCATCAACACGGTACTACTACTTCTACTGGTTCAGAATCATGGGGAAATATAGAGGGAGCAGTTAATAACATGCAAGAGATTGATTGCTGTAACAAATTCAGCATCAACGTGATTTCATCAGAAGGAAATCAAGAAGAAAATCCAGTGTTGCCTGCATTAGTAGCATCTTCTCCAGTCACTGGTGGAACCTCCTGCAGCAGCAGCTTGAACCAGATGGAGAATAAAAATAGTAGTAGCTGTTGCAACACATCAGCTCCAACATCCACGGCACACTCACCTAATTATAATTATTCCAACACAATCTTTGATGATTTGGAGATGCTCCTTCAGGATGATGAAACATCTTCCTCCTACTGGAAAGATATTCTAGACTTGACTTCTACATCTGCATCAAAAATTTCATGGTAG 1113 0.4223 MGRSPCCDESSGNVKKGPWTEEEDEKLIDYIKKHGHGSWRTLAKRAGLNRCGKSCRLRWANYLRPDIKRGKFTQDEERIIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDFRHLMNLTQLLGISSNMGNPMMNTWGANNPNIGLQGDVTQLAKLQLLQNLLQIMNSNTFANMGNNNNNPNYLLGNPSFNNNAYLNNGSNTLQAVANHGALFPHQHGTTTSTGSESWGNIEGAVNNMQEIDCCNKFSINVISSEGNQEENPVLPALVASSPVTGGTSCSSSLNQMENKNSSSCCNTSAPTSTAHSPNYNYSNTIFDDLEMLLQDDETSSSYWKDILDLTSTSASKISW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60908g00003 370 FunFam Transcription factor MYB39 71 132 - -
Stsc60908g00003 370 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc60908g00003 370 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc60908g00003 370 FunFam MYB-related transcription factor 15 68 - -
Stsc60908g00003 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc60908g00003 370 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Stsc60908g00003 370 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc60908g00003 370 SMART sant 68 116 IPR001005 -
Stsc60908g00003 370 SMART sant 15 65 IPR001005 -
Stsc60908g00003 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Stsc60908g00003 370 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc60908g00003 370 CDD SANT 71 114 IPR001005 -
Stsc60908g00003 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 63 IPR017930 -
Stsc60908g00003 370 CDD SANT 18 63 IPR001005 -
Stsc60908g00003 370 Gene3D - 71 118 - -
Stsc60908g00003 370 Gene3D - 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60908g00003 Stsc-Chr60908 15646 17045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60908g00003 1 359 MYB Transcription Factor Family AT5G16770 44.475 2.94e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60908g00003 Myb_DNA-binding 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60908g00003 K09422 - gmx:778082 381.719