Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60907g00004 ATGGAGCGATTTCGCGTCTTTGCCTCTGTCGAATTGAGCACCGTTATATCCCAACCAAAAGGTTCCAATCCCAGTTTCGATGAAATGCAAAACATCCCTGCCACTGCCGATGTTGATTGTAGTGAGGCTTCAAGATCGGCTGAGATGCTGAAGATTTGGTCAACGAATAGGATCCTCAGCAGTTCTTTGTGGAGTACCTCCAGAACCAGTGATGGGGAATTACTGCCCAATATGGCTGAAGCTCGACAGAAGCTGCCAATCTTCCAATGGTGTCCGTTGAGATTTCACCGCTCGCAGAGTTTTCCTTCCGAAAGTATATGTCCTGCAAAAGCCCCTTCTCTCCCTCTCCGTCACTCAATCACTCGTGTTTTCACGATGTACTGCTCAATTTCCGGCAAGGTGGCGGAAGACCCAGTGGTGTCTAAGAAATCAGGTCTTCTTTTCGAGAAGCGGTTAATCGAAAAGCACATAGCGGATTTTGGGAAATGTCCAATAACTGGACAACCCCTCACTTTAGATGATCTTGTACCAGTCAAACCAGCCAAGATTTCTGCAACTTTGGCCCCTGTTGAGTCTATAGAGGAATATACCCAGATATCTAGCCACCCCTTCCACAAAACAAACAAACCAGGCATTATATCTCTTGACATTCTCTATTCTAAGGATTTAATTGCAACTGGCGGTATTGATACAAATGCTGTTATTTTTGACAAACCATCAGGACAAATATTATCTGCACTGCGCGGTCATTCTGAAAAGGTTACCAGCGTAAAGTTTGCAGCTCAGGGCAAAGTGTTATTAACTGGTTCAGCAGATAAGACTGTTCGTGTGTGGCAAGGCTCAGACGATGGTAACTATAACTGCAAACACATCCTGAGGGATCATACGGCGGAGGTAGAAGCTGTCACTGTCAATAAAACTAATAAATACTTTGTGACTGCTTCACTTGATGGAACTTGGTGCCTTTATGATCTATCTTCAGGAACATGTCTGACCCAGGCACTTCAGGTTCTCCCCAAGGCTATACGTCTGCAGCTTTTAATGGGCGCCTTCTTGGAACTGGCACGACAGATGCTCTTGTTAATATCTGGGACGTAA 1098 0.4517 MERFRVFASVELSTVISQPKGSNPSFDEMQNIPATADVDCSEASRSAEMLKIWSTNRILSSSLWSTSRTSDGELLPNMAEARQKLPIFQWCPLRFHRSQSFPSESICPAKAPSLPLRHSITRVFTMYCSISGKVAEDPVVSKKSGLLFEKRLIEKHIADFGKCPITGQPLTLDDLVPVKPAKISATLAPVESIEEYTQISSHPFHKTNKPGIISLDILYSKDLIATGGIDTNAVIFDKPSGQILSALRGHSEKVTSVKFAAQGKVLLTGSADKTVRVWQGSDDGNYNCKHILRDHTAEVEAVTVNKTNKYFVTASLDGTWCLYDLSSGTCLTQALQVLPKAIRLQLLMGAFLELARQMLLLISGT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60907g00004 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 184 IPR013083 -
Stsc60907g00004 365 SUPERFAMILY WD40 repeat-like 207 332 IPR036322 GO:0005515
Stsc60907g00004 365 PANTHER PRE-MRNA-PROCESSING FACTOR 19 183 333 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Stsc60907g00004 365 SMART WD40_4 195 237 IPR001680 GO:0005515
Stsc60907g00004 365 SMART WD40_4 285 324 IPR001680 GO:0005515
Stsc60907g00004 365 SMART WD40_4 240 279 IPR001680 GO:0005515
Stsc60907g00004 365 Pfam WD domain, G-beta repeat 241 278 IPR001680 GO:0005515
Stsc60907g00004 365 Pfam WD domain, G-beta repeat 287 324 IPR001680 GO:0005515
Stsc60907g00004 365 ProSiteProfiles U-box domain profile. 121 199 IPR003613 GO:0004842|GO:0016567
Stsc60907g00004 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 279 IPR001680 GO:0005515
Stsc60907g00004 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Stsc60907g00004 365 SUPERFAMILY RING/U-box 126 178 - -
Stsc60907g00004 365 SMART Ubox_2 125 196 IPR003613 GO:0004842|GO:0016567
Stsc60907g00004 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 279 - -
Stsc60907g00004 365 Gene3D - 186 343 IPR015943 GO:0005515
Stsc60907g00004 365 FunFam Pre-mRNA-processing factor 19, putative 126 183 - -
Stsc60907g00004 365 CDD RING-Ubox_PRP19 126 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60907g00004 Stsc-Chr60907 13017 17976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60907g00004 179 333 U-box Gene Family AT2G33340 66.452 1.21e-70 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60907g00004 K10599 - gmx:100800213 265.774