Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60900g00003 ATGAAGAGGTCTAGGGACGATATTTTCGCGAGTCCTCAACTGAAACGACCTATGGTGTCTTCTCGAGGAGAAGCGTCGGGGCAACCCCAGATGATGAATGGAGGTGCTGGTGCTCAGAAGCTAACTACAAATGATGCATTGGCATATCTCAAGGCAGTAAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTTAAGGCTCAAAGAGTTGATACTGCAGGCGTGATAGCTAGAGTTAAAGAACTCTTTAAAGGGCATAGAGACTTGATTTTGGGATTCAACACCTTCTTGCCAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCAATTAATTTTGTGAACAAAATTAAGACCCGGTTTCAAGGCGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTACAGAAAGGAAAGCAAGTCTATAACAGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAAGACCATCCAGATCTTCTTGATGAGTTTACTCATTTTCTTCCGGACACTTCCGCAGCAGCCTCTACTCATTATATTTCTGCTCGAAATTCTATGCTACGTGATAGGAGTTCTCCGATGCCAACTATGCGGCAAATGCATGTTGAAAAGAGAGAAAGGACTATGGCCTCACATGGTGACCGTGACCTCAGTGTTGACCGTCCTGATCCTGATAATGACAGAGGTCTGATGAGGGCAGAAAAGGATAGGAGACGTCTAGAGAAGGATAAAGACCGCAGAGAGGAGAGAGATAGGAGAGAACGTGACAGGGATGATAGAGATTATGAGCATGATGGTGGTAGAGATAGGGAAAGGTTCAACAACAAACGGAAATCTGATCGTAGGGCTGAAGACTCTGGAGCCGAAGCATTGCTTGATGCTGATGAAAATATTGGCATGTATAGCCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAAGAATTTTTGAAGTGCTTGCATATATACAGCAGGGAAATAATTACTAGACATGAATTGCAGTCATTGGTTGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGATACAATCTGAAAAGAATGAAGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGAGTGATGGACAGAGGCCAAAATCTGTGAAGGTTGAAGACAGGGATCGTGATCGAGACCGTTATAGGGATGATGGCATGAAAGAAAGGGATCGTGAATTTCGAGAGAGAGACAAATCCACTGCCCTTGCCAACAAGGATGTTTCAGGTTCTAAGATGTCCATATATCCCAGCAAGGATAAGTATTTGTCAAAGCCTATAAATGAGCTGGACCTTTCTAATTGTGATCAATGCACTCCAAGCTATCGTCTATTGCCCAAAAATTACCCAATACCTGTAGCTAGCCAGAGAACGGAACTTGGTGCAGAAGTATTAAATGATCACTGGGTGTCTGTGACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAATATGAAGAAAGTTTATTCAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGCTAGAGTCTGTAAATGCAACTACAAAGCGAGTGGAAGAGCTGTTAGAAAAGATCAATAATAATATAATCAAAGGAGACAGTCCAGTTCGTATTGAGGAGCACTTAACAGCCTTAAATCTTAGGTGTGTTGAACGATTATATGGTGACCATGGGCTAGATGTGATGGATGTGTTAAAGAAAAATGCATCTCTGGCTTTGCCAGTGATATTAACACGTTTGAAGCAGAAACAGGATGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAAAATTATCATAAATCTCTTGATCACCGTAGCTTCTACTTTAAACAGCAGGATACAAAGAGCTTGAGTACCAAAGGAGTGGCTACAAAAGCAGAGAAGTGTGTGGGAGTAGGAGTCCTATGTAGAGCAGCTGATGCATTTGGAGAGAGTGTATTTGAGTGA 2109 0.4154 MKRSRDDIFASPQLKRPMVSSRGEASGQPQMMNGGAGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRVDTAGVIARVKELFKGHRDLILGFNTFLPRGYEITLPLEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKSITEVYQEVAALFQDHPDLLDEFTHFLPDTSAAASTHYISARNSMLRDRSSPMPTMRQMHVEKRERTMASHGDRDLSVDRPDPDNDRGLMRAEKDRRRLEKDKDRREERDRRERDRDDRDYEHDGGRDRERFNNKRKSDRRAEDSGAEALLDADENIGMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLIQSEKNEGGFLAGVMNKKSLWSDGQRPKSVKVEDRDRDRDRYRDDGMKERDREFRERDKSTALANKDVSGSKMSIYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNIIKGDSPVRIEEHLTALNLRCVERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKGVATKAEKCVGVGVLCRAADAFGESVFE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60900g00003 702 Coils Coil 254 274 - -
Stsc60900g00003 702 Coils Coil 550 574 - -
Stsc60900g00003 702 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
Stsc60900g00003 702 Pfam Paired amphipathic helix repeat 343 387 IPR003822 GO:0006355
Stsc60900g00003 702 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Stsc60900g00003 702 FunFam Paired amphipathic helix SIN3-like protein 124 195 - -
Stsc60900g00003 702 FunFam Paired amphipathic helix protein SIN3 320 392 - -
Stsc60900g00003 702 SUPERFAMILY PAH2 domain 325 387 IPR036600 GO:0006355
Stsc60900g00003 702 FunFam Paired amphipathic helix protein Sin3 45 107 - -
Stsc60900g00003 702 Gene3D Paired amphipathic helix 124 196 IPR036600 GO:0006355
Stsc60900g00003 702 MobiDBLite consensus disorder prediction 208 312 - -
Stsc60900g00003 702 SUPERFAMILY PAH2 domain 123 194 IPR036600 GO:0006355
Stsc60900g00003 702 PANTHER SIN3B-RELATED 39 681 IPR039774 GO:0003714
Stsc60900g00003 702 ProSiteProfiles PAH domain profile. 318 390 IPR003822 GO:0006355
Stsc60900g00003 702 MobiDBLite consensus disorder prediction 223 312 - -
Stsc60900g00003 702 SMART hdac_interact2seq4b 481 581 IPR013194 -
Stsc60900g00003 702 SUPERFAMILY PAH2 domain 38 108 IPR036600 GO:0006355
Stsc60900g00003 702 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Stsc60900g00003 702 MobiDBLite consensus disorder prediction 412 450 - -
Stsc60900g00003 702 Gene3D Paired amphipathic helix 323 391 IPR036600 GO:0006355
Stsc60900g00003 702 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Stsc60900g00003 702 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Stsc60900g00003 702 Pfam Sin3 family co-repressor 484 574 IPR013194 -
Stsc60900g00003 702 MobiDBLite consensus disorder prediction 12 33 - -
Stsc60900g00003 702 MobiDBLite consensus disorder prediction 414 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60900g00003 Stsc-Chr60900 25401 32912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60900g00003 28 144 WRKY Transcription Factor Family AT4G12020 49.573 1.21e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60900g00003 Sin3_corepress 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60900g00003 K11644 - gmx:100817626 1141.33