Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60899g00001 ATGGAGCGCATTGAAGCACTATTCCATGCACCAAAACCCAGCAAAAAGTGGCACTCTGCTTTCTTAGCCATATATTCTTCACGAGTCCTCGCGTCACACTTCACACTCAACAAAACCAAACCAACAAAAATCAAACCTTCTCCATCATTCACCGTCATTGATTTTAATCCACAGAAGCCCTTCAAAATCGACCAAACCACTCTCACGAAGATCGTCAAAGAAAAAGACCTTACTACCCTCAAGAACCACGGCGGCATTGAAGGCATAGCTAAAGCCCTCGAAACCGACGCTGAAAACGGCATTGGCATCAAAGGAAACGAATTTGTGGAAGATGACGTGTCAAGAAGACGGCAAGTATTCGGTTCCAACACTTACCCGAAGCCACGTTCTAGAAGCTTCTATCACTTCGTGTTGGAAGCTTTCAAAGACGTTACGATTCTCATCCTCTTGGGATGCGCAGCGCTTTCTCTCGGCTTCGGAATCAAGCAGCATGGACTCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTCCTTGCCGTGTTCATCGTCATCTCATTATCTTCTGTAAGCAATTTCAGACAGAATAGACAGTTTGACAAGTTGTCTCAGCTCAGCAACGATATACAAATCGATGTGGTTAGAATGGGAAGAAGACAACAGATCTCGATCTACGATATCGTCGTCGGCGACGTCGTTTGCTTGAAGATCGGCGATCAGGTTCCGGCGGACGGGCTATTCGTCGACGGACACTCGCTGCGGATCGACGAATCGAGCATGACCGGGGAGAGCGATCATGTGGAGGTTAGCAGGGTCAACAATAATCCGTTCTTGTTATCCGGAACGAAGGTGGTTGACGGTTACGCGAAGATGGTGGTTACTTCCGTTGGAATGAAGACTACCTGGGGCGAGATGATGAGTTCGATAAGCCGCGATGTTAACGAGGAAACACCGTTGCAAGCTCGCCTTAACAAGCTCACTTCTGCAATCGGGAAGGTTGGTTTGGCGGTTGCTTTTCTTGTTCTTGTTGTTTTGCTTGTTCGTTACTTCACCGGGAACACATATAATGAGAATGGAATAAAAGAGTATAACGGGAGGAAGACAAAGTTCAGTGATGTGATGAATGCTGTGGTTGGAATCGTGGCGGATGCGGTTACAATTGTCGTTGTCGCGATCCCGGAAGGGCTGCCGTTGGCGGTTACGTTGACTTTGGCTTATTCCATGAAGAAAATGATGGCGGATCACGCTATGGTGAGGAAGCTCTCAGCGTGTGAGACGATGGGATCTGCTACCACTATTTGCACGGATAAAACAGGAACACTCACACTCAACGAGATGAAGGTGACCAAGTTCTGGATGGGATTAGAGCCTGTGATGGAGAATGCGTATTCATCCGTTGCGCCTTATGTTCTTGAATTGATCCAAGAAGGTGTGGCTATGAACACAACCGGTAGCGTTCACAAGTCGGAATCCGGTTCGGGTTTCGAGTTTTCCGGTAGTCCTACAGAGAAAGCAATACTCTCATGGGCGGTTTTGGAGTTGGATATGAAGATGGATGAATTGAGAAAAGGATGCTCCATAATTCAGGTTGAGACGTTCAACTCAAAGAAGAAAAGGAGCGGGGTTTTGTTGAGAAGGAAAGTGGATAACACTGTCAATGTTCACTGGAAAGGTGCTGCTGAAATGGTGCTGAAAATGTGTTCAAAGTATTACGATGCTTCTGGAATTGTGAAAGATCTTGACAGAGAAAGTATGATGAAATTCGAGAACATCATTCAAGGAATGGCAGCTAGTAGTCTTCGCTGCATCGCTTTTGCACAAACAGAAGTTGAAGATGGAGAGGGTAAAGCTATGGTGAAAGAAACTGATTTGACTCTAATAGGATTAGTCGGAATCAAAGATCCGTGCCGGCCGGGGGTGAAGGCGGCGGTGGAGTCTTGCCAGAATGCCGGAGTTAACGTCAAAATGATTACAGGGGACAATGTTTTCACAGCAAAAGCAATAGCAACCGAATGCGGCATACTCCGACATGATCAAGACATGGCTGGTGCGGTGGTGGAAGGGGAGGAGTTTCGCAACTACTCGCCGGAGGAAAGACTGGAGAAAGTGGAGAAGATCTGCGTGATGGCGAGATCTTCTCCGTTCGACAAGCTTCTCATGGTAGAGTGCCTTAAACAGAAGGGACACGTGGTTGCGGTGACAGGGGACGGAACAAACGATGCGCCGGCACTTAAGGAAGCTGATATTGGACTCTCCATGGGGATTCAGGGCACGGAGGTGGCGAAAGAGAGCTCCGATATTGTCATATTAGACGACAATTTCGCCTCGGTGGTAACGGTGTTGAGGTGGGGAAGGTGTGTTTACAACAACATTCAGAAGTTTATACAGTTTCAATTGACAGTGAATGTTGCTGCACTTGCGATTAATTTCGTGGCGGCGGTGTCGGCCGGCGAAGTTCCCCTCACGGCTGTGCAACTTTTGTGGGTGAATTTGATCATGGACACGTTGGGAGCATTGGCACTTGCAACTGAAAAACCTAGCATGGAGTTAATGGAGAAACCACCAGTTGGAAGAACAAAGCCTCTGATAACAAACGTGATGTGGAGGAACCTTGTGGCACAAGCTTTGTACCAGATTGCGGTTTTGTTGACCCTTCAGTTCAGAGGTGAGTCTATCTTTGGTGTTAGTGAAGGGGTTAATGACACTTTGATTTTCAACACTTTTGTTATGTGCCAAGTGTTCAATGAGTTCAATGCGAGGAAATTGGAGAAGAGGAATGTGTTTAAGGGGTTGCATAGGAGCAAGTTGTTCTTGGGGATTATTGGTGTGACAATGGTACTCCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGACACTGAGAGGCTGAATTGGGGGCAATGGGGTGTTTGCATTCTTCTTGGTGCTGCTTCTTGGCCAATTGGTTGGGTTGTCAAGTTGATTCCTGTCCCAGAAAAGCCATTTCTTGATTTCCTTAGTATCAAGAAGTGA 3012 0.4681 MERIEALFHAPKPSKKWHSAFLAIYSSRVLASHFTLNKTKPTKIKPSPSFTVIDFNPQKPFKIDQTTLTKIVKEKDLTTLKNHGGIEGIAKALETDAENGIGIKGNEFVEDDVSRRRQVFGSNTYPKPRSRSFYHFVLEAFKDVTILILLGCAALSLGFGIKQHGLKEGWYDGGSIFLAVFIVISLSSVSNFRQNRQFDKLSQLSNDIQIDVVRMGRRQQISIYDIVVGDVVCLKIGDQVPADGLFVDGHSLRIDESSMTGESDHVEVSRVNNNPFLLSGTKVVDGYAKMVVTSVGMKTTWGEMMSSISRDVNEETPLQARLNKLTSAIGKVGLAVAFLVLVVLLVRYFTGNTYNENGIKEYNGRKTKFSDVMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADHAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWMGLEPVMENAYSSVAPYVLELIQEGVAMNTTGSVHKSESGSGFEFSGSPTEKAILSWAVLELDMKMDELRKGCSIIQVETFNSKKKRSGVLLRRKVDNTVNVHWKGAAEMVLKMCSKYYDASGIVKDLDRESMMKFENIIQGMAASSLRCIAFAQTEVEDGEGKAMVKETDLTLIGLVGIKDPCRPGVKAAVESCQNAGVNVKMITGDNVFTAKAIATECGILRHDQDMAGAVVEGEEFRNYSPEERLEKVEKICVMARSSPFDKLLMVECLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPSMELMEKPPVGRTKPLITNVMWRNLVAQALYQIAVLLTLQFRGESIFGVSEGVNDTLIFNTFVMCQVFNEFNARKLEKRNVFKGLHRSKLFLGIIGVTMVLQVVMVEFLKKFADTERLNWGQWGVCILLGAASWPIGWVVKLIPVPEKPFLDFLSIKK 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60899g00001 1003 NCBIfam calcium-translocating P-type ATPase, PMCA-type 62 990 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc60899g00001 1003 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 439 639 IPR023299 GO:0000166
Stsc60899g00001 1003 Pfam Cation transporting ATPase, C-terminus 818 988 IPR006068 -
Stsc60899g00001 1003 Gene3D - 430 778 IPR023214 -
Stsc60899g00001 1003 CDD P-type_ATPase_Ca_PMCA-like 113 866 - -
Stsc60899g00001 1003 PRINTS H+-transporting ATPase (proton pump) signature 733 749 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60899g00001 1003 PRINTS H+-transporting ATPase (proton pump) signature 587 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60899g00001 1003 PRINTS H+-transporting ATPase (proton pump) signature 765 790 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 649 659 - -
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 433 447 - -
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 757 769 - -
Stsc60899g00001 1003 PRINTS P-type cation-transporting ATPase superfamily signature 627 638 - -
Stsc60899g00001 1003 FunFam Calcium-transporting ATPase 628 778 - -
Stsc60899g00001 1003 Pfam Cation transporter/ATPase, N-terminus 83 156 IPR004014 -
Stsc60899g00001 1003 SUPERFAMILY Calcium ATPase, transduction domain A 209 307 IPR008250 -
Stsc60899g00001 1003 FunFam Calcium-transporting ATPase 182 309 - -
Stsc60899g00001 1003 SFLD Haloacid Dehalogenase 415 786 - -
Stsc60899g00001 1003 SUPERFAMILY HAD-like 431 838 IPR036412 -
Stsc60899g00001 1003 Pfam haloacid dehalogenase-like hydrolase 430 747 - -
Stsc60899g00001 1003 Pfam E1-E2 ATPase 209 411 - -
Stsc60899g00001 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 990 IPR023298 -
Stsc60899g00001 1003 PANTHER CATION TRANSPORTING ATPASE 54 990 - -
Stsc60899g00001 1003 SFLD p-type atpase 415 786 IPR044492 -
Stsc60899g00001 1003 NCBIfam HAD-IC family P-type ATPase 376 455 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60899g00001 1003 NCBIfam HAD-IC family P-type ATPase 706 814 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60899g00001 1003 FunFam Calcium-transporting ATPase 443 634 - -
Stsc60899g00001 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 435 441 IPR018303 -
Stsc60899g00001 1003 Gene3D - 443 634 IPR023299 GO:0000166
Stsc60899g00001 1003 SMART Cation_ATPase_N_a_2 82 161 IPR004014 -
Stsc60899g00001 1003 Gene3D - 139 986 - -
Stsc60899g00001 1003 Gene3D - 110 309 - -
Stsc60899g00001 1003 FunFam Calcium-transporting ATPase 750 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60899g00001 Stsc-Chr60899 2101 5207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60899g00001 4 1003 Primary Pumps ATPases AT3G22910 68.812 0.0 1325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60899g00001 K01537 - gmx:100793918 1609.73