Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60897g00003 ATGGCTGGATTGGACATTGATGAAGGTGGTGGTGGTGGAGTTTTAACAGATTACTCTCCAAGCAGTGTAGAATCAAGAACACCTACATCTTCAAGAGCAAGCACTTCAGATTCTGAGGCTCTACCAGGAAGTGGTGGTTTCAGAGAAGGTGGTGGTACTAATCCTAACAACCAATGGCGTGGTTTCTTCAAGCTTCTCAAGAAAGGGTCACAGATGCCATTTCAAACATTTCACCCTCTTAAGAGTGTTCCTAAGTTAACTAGGAGGAAGAGTAAGAGGGTTAGGGAGGATCTTATTCCTTCTCCAGCTTTGAATTCTTCTTTTGACTCTGACTTTGCCAGCTTCAAATCTTCATGGAAGAATTTCACTCTCTCTGAACTCCAGGCTGCAACTGATGACTTCAGCCATGATAATGTGATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGGGAAATTGGAAGATGGGAACTTTGTTGCCATAAAGAAGCTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGGATTATAGTTCATGTGGACCATCCAAACATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTCCTTGTTCTTCAGCTCTCTCCACATGGCAGCTTATCATCCATACTTTATGGGCCTAGAGAGAAGCTGAATTGGAGTCTGAGATTTAAGATTATCATGGGAACTGCTGAGGGACTTTGCTATCTCCATGAGGGATGTCAAAGAAGGATCATTCACAAGGATATCAAGGCTTCTAACATTCTTCTCTCTGAGACTTTTGAGCCTCAGATATCTGATTTTGGCCTAGCAAAATGGTTACCTGACCAATGGACTCACCATACTGTGTCCAAAGTACCTTCCCCCTGA 894 0.4329 MAGLDIDEGGGGGVLTDYSPSSVESRTPTSSRASTSDSEALPGSGGFREGGGTNPNNQWRGFFKLLKKGSQMPFQTFHPLKSVPKLTRRKSKRVREDLIPSPALNSSFDSDFASFKSSWKNFTLSELQAATDDFSHDNVIGEGGYAEVYLGKLEDGNFVAIKKLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIIMGTAEGLCYLHEGCQRRIIHKDIKASNILLSETFEPQISDFGLAKWLPDQWTHHTVSKVPSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60897g00003 297 ProSiteProfiles Protein kinase domain profile. 134 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60897g00003 297 Gene3D Transferase(Phosphotransferase) domain 1 211 296 - -
Stsc60897g00003 297 Gene3D Phosphorylase Kinase; domain 1 106 208 - -
Stsc60897g00003 297 Pfam Protein tyrosine and serine/threonine kinase 137 285 IPR001245 GO:0004672|GO:0006468
Stsc60897g00003 297 SMART serkin_6 134 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60897g00003 297 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 104 208 - -
Stsc60897g00003 297 SUPERFAMILY Protein kinase-like (PK-like) 119 291 IPR011009 -
Stsc60897g00003 297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Stsc60897g00003 297 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Stsc60897g00003 297 PANTHER OS08G0249100 PROTEIN 28 294 IPR046958 -
Stsc60897g00003 297 MobiDBLite consensus disorder prediction 18 41 - -
Stsc60897g00003 297 MobiDBLite consensus disorder prediction 1 55 - -
Stsc60897g00003 297 FunFam Os07g0541700 protein 210 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60897g00003 Stsc-Chr60897 7519 9914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60897g00003 106 288 Receptor kinase-like Gene Family AT1G53420 43.316 2.67e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60897g00003 PK_Tyr_Ser-Thr 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60897g00003 - - gmx:102670300 457.218