Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60895g00005 ATGGAGAATTTATTCAAGAGTTGGATTTCTCAACATTTGGGAGTGGAAGAAGAACAAGATGGTATTATCATCAATCAAAGCCATATGATGAACAACTCTTTGGATGAAGAGCAAGAGTTCCTAATGGAAATCTTTAATAATGGTCAACCAGATTTCTCACCGGAAACTAGTCATGAACATTATTATTATTCTTCCCCTAATAATGATAATAATAATAATAATGTTCCTAATAATTGTGACACAATCCCCAACAATAATAATAATGGTGTATCATTTGAAGATACAACACTTAAAAAAAGTAACAGCTACAATTATATGATGTCTTTAGAGAAAAATTGTTCTAGTTCTACTTCTTCTAGCTATGTGTTATCATTTGAGCCTAATTCCTCATCAAAGGAAAGAAGAACAAGTGAGGATGGTGATGGGTTTGAAGATGCAACAACTAAAAAGCTCAAAGCTAAGACACCAGATCACATAATGGCTGAGAGGAAAAGGAGGCAAGATCTAACAACAAGCGTCATCCAACTTGCAGCCACCATACCTGGATTGAAGAAGATGGACAAGGCCTACGTAATTCGCGAAGCTCTTAATTACATAAAAGCACTTCAAGATCGAATTGAAGAGTTGGAGAACCAAAACAAACATAGAAAAGTAGATTCAGCAATATTAATCGGAAGATCTCAAGATTCATCAACAGATAAAAGCAGTATCATCAGCTGTGAAACAACATCAGATAATAATGGTGGTGCTTTCAATGAATCATCACTTGAGATTGAAGCAAAAGTCTTGGAAAAAGAAGTGCTCATTAGAATCCAATATGAGAAGCCAAAAAACAACATAATGCTCAAAATACATGCCTTGCTTGACAAGCTTCATCTCTCTATAGCATGTAACAGTGTGTTACCATTTGGGACTTCTGCTATTGTGATAATTACCATTGTTGCTCAGGATCTCTTTCGTTACCACATAATGTCATTCTTGTCAATACATAATTTTCAAATTCTAAAAGTACATTAG 1017 0.3451 MENLFKSWISQHLGVEEEQDGIIINQSHMMNNSLDEEQEFLMEIFNNGQPDFSPETSHEHYYYSSPNNDNNNNNVPNNCDTIPNNNNNGVSFEDTTLKKSNSYNYMMSLEKNCSSSTSSSYVLSFEPNSSSKERRTSEDGDGFEDATTKKLKAKTPDHIMAERKRRQDLTTSVIQLAATIPGLKKMDKAYVIREALNYIKALQDRIEELENQNKHRKVDSAILIGRSQDSSTDKSSIISCETTSDNNGGAFNESSLEIEAKVLEKEVLIRIQYEKPKNNIMLKIHALLDKLHLSIACNSVLPFGTSAIVIITIVAQDLFRYHIMSFLSIHNFQILKVH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60895g00005 338 Gene3D - 143 218 IPR036638 GO:0046983
Stsc60895g00005 338 Pfam Helix-loop-helix DNA-binding domain 158 203 IPR011598 GO:0046983
Stsc60895g00005 338 Coils Coil 192 219 - -
Stsc60895g00005 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 221 IPR036638 GO:0046983
Stsc60895g00005 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Stsc60895g00005 338 MobiDBLite consensus disorder prediction 118 151 - -
Stsc60895g00005 338 MobiDBLite consensus disorder prediction 131 151 - -
Stsc60895g00005 338 MobiDBLite consensus disorder prediction 49 93 - -
Stsc60895g00005 338 PANTHER BHLH TRANSCRIPTION FACTOR 55 316 - -
Stsc60895g00005 338 SMART finulus 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60895g00005 Stsc-Chr60895 33924 36826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60895g00005 157 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.242 8.78e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60895g00005 HLH 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60895g00005 - - aip:107638103 369.392