Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60893g00004 ATGAATAAGTTGTTAATGGAGGAAAATGATCGATTACAGAAGCAGGTGTCTCAGCTGGTGTGTGAGAATGGGTATATGAAGCAGCAGTTGCATACTCTCCAGCCATCAGCAGCAACCACTGATGCAAGCTGCGATCCAGTGGTTTCGACTACTCAGCAATCTATGAGGGATGCTAATAGTCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTCAGTCTCGAACCTACAAAGATTGCAGAGATCCTAAAAGATCGTCCATCTTGGTTCCGGGATTGCCGGAGCCTAGAGGTTTTCACAATGTTCCCTGCTGGAAATGGAGGCACAATTGAACTTGTCTACACACAGACATATGCTCCTACCACACTGGCTCCTGCTCGGGATTTCTGGACTCTCAGATACACTACGACTCTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTATCTGGTTCTGGGACTGGGCCTAATGCATCAGCTTCTGCTCAGTTTGTGAGGGCTGAAATGCAGCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTTGACCACCTAAACCTTGAGGCATGGAGTGTGCCAGAAGTGCTACGACCACTATATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCGCTACGTTATATCAGGCAAATAGCCCAAGAAACAAGTGGTGAAGTGGTTTATGGCTTGGGTAGGCAACCTGCCGTTCTGAGAACTTTCAGTCAAAGGTTGAGCAGAGGTTTCAATGATGCTGTCAATGGATTCAATGACGATGTCTGGTCTGTACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAGTTCAACCAAGAATGTTAGTGGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGCTACTCCAAAACATCCCTCCTGCAGTTTTGGTTCGTTTCCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTGAAATCTGGTTCATATGCCCATCCAGGAATGAGGCCTACAAGGTTCACTGGCAATCAAACAATCATGTCTCTTGGACATACAATTGAACATCAAGAGATGCTGGAAGTTATCCGTCTTGAAGGCCACTCTCTTGCTCAAGAAGACGCATTTGCCTCTAGGGACGTTCATCTCTTGCAGTTATGTAGTGGAATTGACGAGAATGCCGTGGGAGCTTGTTCTGAGCTCATATTTGCTCCTATTGATGAAATGTTCCCAGATGATGCTCCATTGTTGCCTTCTGGTTTCCGCATTATCCCATTGGATTCAAAACCAGGTGACAAAAAGGATTCCATGACAGCAACTCAAACGTTGGATTTGACATCTGGTTTTGAAGTTGGCCCAGCAACAAATGGTGCAGGAGACGCGGTATCGGGTCATAATGCTCGGTCGGTGTTGACTATTGCCTTCCAGTTTCCTTTTGACAGTAATCTGCAGGATAATGTTGCTGTCATGGCACGCCAATATGTCCGTAGTGTGATTTCCTCTGTGCAGAGAGTTGCCATGGCGATATCTCCATCTGGTATAAACCCGGCTTTTGGCTCGAAACTCTCTCCTGGCTCTCCAGAGGCTCTTACACTGGCTAACTGGATCTGCTACAGTTATAGTTATTATTTGGGGGCAGAGTTGCTGAGATCTGATTCTCTTAGTGGTGAGTCAGTGCTCAAACATTTATGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCGGTGCCTGTGTTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTTTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGATTCTGGACGCAAGGCATTGTTTGCAGATTTTGCCAAGCTAATGCAGCAGGGTTTTGCATATCTGCCAGCTGGAATCTGCTTGTCGACAATGGGACGACACGTGGCGTACGAACAGGCCATTGCATGGAAAGTACTTGCGGAAGAAGATAACAGTGTCCATTGCTTAGCTTTCTCTTTCGTTAATTGGTCGTTTATATGA 2238 0.4611 MNKLLMEENDRLQKQVSQLVCENGYMKQQLHTLQPSAATTDASCDPVVSTTQQSMRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGTGPNASASAQFVRAEMQPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDVWSVLNCDGAEDVIIAVSSTKNVSGTSNPASSLTFLGGILCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKSGSYAHPGMRPTRFTGNQTIMSLGHTIEHQEMLEVIRLEGHSLAQEDAFASRDVHLLQLCSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSKPGDKKDSMTATQTLDLTSGFEVGPATNGAGDAVSGHNARSVLTIAFQFPFDSNLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPAFGSKLSPGSPEALTLANWICYSYSYYLGAELLRSDSLSGESVLKHLWHHQDAILCCSLKSVPVFIFANQAGLDMLETTLVALQDITLDKIFDDSGRKALFADFAKLMQQGFAYLPAGICLSTMGRHVAYEQAIAWKVLAEEDNSVHCLAFSFVNWSFI 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60893g00004 745 ProSiteProfiles START domain profile. 57 285 IPR002913 GO:0008289
Stsc60893g00004 745 Pfam START domain 67 274 IPR002913 GO:0008289
Stsc60893g00004 745 Gene3D - 101 283 IPR023393 -
Stsc60893g00004 745 CDD START_ArGLABRA2_like 61 277 - -
Stsc60893g00004 745 SMART START_1 66 276 IPR002913 GO:0008289
Stsc60893g00004 745 Coils Coil 2 22 - -
Stsc60893g00004 745 SUPERFAMILY Bet v1-like 66 278 - -
Stsc60893g00004 745 Pfam MEKHLA domain 601 744 IPR013978 -
Stsc60893g00004 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 745 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60893g00004 Stsc-Chr60893 31339 37674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60893g00004 1 745 Homeobox Transcription Factor Family AT5G60690 80.959 0.0 1260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60893g00004 K09338 - gmx:100804870 1348.57