Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60893g00003 ATGGCTATGGCTTTGGCTCAGCATCATCATAGAGAGAGCAGCATTGACAAGCATCTTGATTCCTCAGGAAAATATGTTAGGTACACTGCTGAGCAGGTTGAAGCACTTGAAAGGGTTTACATTGAGTGCCCTAAACCTAGCTCCATGAGGAGGCAGCAGCTCATTAGGGACTGCCCCATTCTTGCAAACATAGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCACGGCTTCAGACCGTGAACCGCAAGCTTACAGCTATGAATAAGTTGTTAATGGAGGAAAATGATCGATTACAGAAGCAGGTGTCTCAGCTGGTGTGTGAGAATGGGTATATGAAGCAGCAGTTGCATACTCTCCAGCCATCAGCAGCAACCACTGATGCAAGCTGCGATCCAGTGGTTTCGACTACTCAGCAATCTATGAGGGATGCTAATAGTCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTCAGTCTCGAACCTACAAAGATTGCAGAGATCCTAAAAGATCGTCCATCTTGGTTCCGGGATTGCCGGAGCCTAGAGGTTTTCACAATGTTCCCTGCTGGAAATGGAGGCACAATTGAACTTGTCTACACACAGACATATGCTCCTACCACACTGGCTCCTGCTCGGGATTTCTGGACTCTCAGATACACTACGACTCTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTATCTGGTTCTGGGACTGGGCCTAATGCATCAGCTTCTGCTCAGTTTGTGAGGGCTGAAATGCAGCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTTGACCACCTAAACCTTGAGGCATGGAGTGTGCCAGAAGTGCTACGACCACTATATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCGCTACGTTATATCAGGCAAATAGCCCAAGAAACAAGTGGTGAAGTGGTTTATGGCTTGGGTAGGCAACCTGCCGTTCTGAGAACTTTCAGTCAAAGGTTGAGCAGAGGTTTCAATGATGCTGTCAATGGATTCAATGACGATGTCTGGTCTGTACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAGTTCAACCAAGAATGTTAGTGGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGCTACTCCAAAACATCCCTCCTGCAGTTTTGGTTCGTTTCCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTGAAATCTGGTTCATATGCCCATCCAGGAATGAGGCCTACAAGGTTCACTGGCAATCAAACAATCATGTCTCTTGGACATACAATTGAACATCAAGAGATGCTGGAAGTTATCCGTCTTGAAGGCCACTCTCTTGCTCAAGAAGACGCATTTGCCTCTAGGGACGTTCATCTCTTGCAGTTATGTAGTGGAATTGACGAGAATGCCGTGGGAGCTTGTTCTGAGCTCATATTTGCTCCTATTGATGAAATGTTCCCAGATGATGCTCCATTGTTGCCTTCTGGTTTCCGCATTATCCCATTGGATTCAAAACCAGGTGACAAAAAGGATTCCATGACAGCAACTCAAACGTTGGATTTGACATCTGGTTTTGAAGTTGGCCCAGCAACAAATGGTGCAGGAGACGCGGTATCGGGTCATAATGCTCGGTCGGTGTTGACTATTGCCTTCCAGTTTCCTTTTGACAGTAATCTGCAGGATAATGTTGCTGTCATGGCACGCCAATATGTCCGTAGTGTGATTTCCTCTGTGCAGAGAGTTGCCATGGCGATATCTCCATCTGGTATAAACCCGGCTTTTGGCTCGAAACTCTCTCCTGGCTCTCCAGAGGCTCTTACACTGGCTAACTGGATCTGCTACAGTTATAGTTATTATTTGGGGGCAGAGTTGCTGAGATCTGATTCTCTTAGTGGTGAGTCAGTGCTCAAACATTTATGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCGGTGCCTGTGTTCATCTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACAACTTTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGATTCTGGACGCAAGGCATTGTTTGCAGATTTTGCCAAGCTAATGCAGCAGGGTTTTGCATATCTGCCAGCTGGAATCTGCTTGTCGACAATGGGACGACACGTGGCGTACGAACAGGCCATTGCATGGAAAGTACTTGCGGAAGAAGATAACAGTGTCCATTGCTTAGCTTTCTCTTTCGTTAATTGGTCGTTTATATGA 2532 0.4633 MAMALAQHHHRESSIDKHLDSSGKYVRYTAEQVEALERVYIECPKPSSMRRQQLIRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLHTLQPSAATTDASCDPVVSTTQQSMRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGTGPNASASAQFVRAEMQPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDVWSVLNCDGAEDVIIAVSSTKNVSGTSNPASSLTFLGGILCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKSGSYAHPGMRPTRFTGNQTIMSLGHTIEHQEMLEVIRLEGHSLAQEDAFASRDVHLLQLCSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSKPGDKKDSMTATQTLDLTSGFEVGPATNGAGDAVSGHNARSVLTIAFQFPFDSNLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPAFGSKLSPGSPEALTLANWICYSYSYYLGAELLRSDSLSGESVLKHLWHHQDAILCCSLKSVPVFIFANQAGLDMLETTLVALQDITLDKIFDDSGRKALFADFAKLMQQGFAYLPAGICLSTMGRHVAYEQAIAWKVLAEEDNSVHCLAFSFVNWSFI 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60893g00003 843 CDD bZIP 76 115 - -
Stsc60893g00003 843 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Stsc60893g00003 843 SUPERFAMILY Homeodomain-like 19 86 IPR009057 -
Stsc60893g00003 843 CDD START_ArGLABRA2_like 159 375 - -
Stsc60893g00003 843 Pfam START domain 165 372 IPR002913 GO:0008289
Stsc60893g00003 843 Gene3D - 17 90 - -
Stsc60893g00003 843 Gene3D - 199 381 IPR023393 -
Stsc60893g00003 843 SUPERFAMILY Bet v1-like 164 376 - -
Stsc60893g00003 843 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Stsc60893g00003 843 Pfam MEKHLA domain 699 842 IPR013978 -
Stsc60893g00003 843 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Stsc60893g00003 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 21 843 IPR044830 GO:0003700
Stsc60893g00003 843 SMART HOX_1 21 87 IPR001356 GO:0003677
Stsc60893g00003 843 Coils Coil 93 120 - -
Stsc60893g00003 843 CDD homeodomain 24 84 IPR001356 GO:0003677
Stsc60893g00003 843 SMART START_1 164 374 IPR002913 GO:0008289
Stsc60893g00003 843 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60893g00003 Stsc-Chr60893 31339 37674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60893g00003 1 843 Homeobox Transcription Factor Family AT5G60690 81.176 0.0 1433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60893g00003 START 3.7e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60893g00003 K09338 - gmx:100804870 1514.59