Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60891g00008 ATGGCTTCAGTTCCGGGGCAATTGGTGTGGGAGATCGTGAAGAAGAACAACTGCTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGTGTTGAATTCAGCAGAGAGCCCAACAACCTCTACAATCTCAACTCTTTTAAATACTCAGTGGTGTTATATTGTTGGCCTGCTGGTAAGGATCAGGGTGTGTTGTTGGCTACAACTAAGACCAAGAAACAGAACAAGCCATCTGCTCATCTTCACAAGTCTCTGATGAAGAAGGAGTTCAGTAGGATGGCTAAGGCTGTTCAAAATCAGGTGACAAAGAACCACTACAGGCCTGATCTCACTAATGCCGCACTTGCAAGGTTGAGTGCCGTCAATAGAAGCATCAGAGTTGCCAAATCTGGTGTCAAGAAGAGGAACAGACAGGGCTTGAAGATCCGTGGCAGGAAGTGA 438 0.468 MASVPGQLVWEIVKKNNCFLVKEFGRGTQSVEFSREPNNLYNLNSFKYSVVLYCWPAGKDQGVLLATTKTKKQNKPSAHLHKSLMKKEFSRMAKAVQNQVTKNHYRPDLTNAALARLSAVNRSIRVAKSGVKKRNRQGLKIRGRK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60891g00008 145 PANTHER 60S RIBOSOMAL PROTEIN L28 1 145 IPR002672 GO:0003735|GO:0005840|GO:0006412
Stsc60891g00008 145 Gene3D - 6 128 - -
Stsc60891g00008 145 FunFam 60S ribosomal protein L28 5 128 - -
Stsc60891g00008 145 Pfam Ribosomal L28e protein family 8 123 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60891g00008 Stsc-Chr60891 31503 34167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60891g00008 1 138 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 63.636 4.46e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60891g00008 K02903 - gmx:100499963 228.794