Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60889g00005 ATGGAAGCTGGAAGGGCTCAGGTGATTGCTGGTTCACATGCAAGAACTGATACCTTTCTGTCGACTGGCTTGGTTATTTCTCAACTTGGGATGGGAAATGTAGCACATTGGCACCATCTCAAGTGGTTGTTCTTGCTTCTTCTGCTGCCATTGAAGCCAGTTTTGTGTGATGACCGTTGGGATGGAGTGGTTGTCACACAATCAAACTTCTTAGCCCTTCAAGCATTCAAGCAAGAACTCATTGACCCAAAAGGATTCTTGAGAAGCTGGAATGACAGTGGCTATGGAGCTTGCTCAGGTGGCTGGGCTGGTATCAAGTGTGCTCAGGGTGAAGTCATTGTGATCCAGCTTCCATGGAAGGGTTTCAAGGGCCACATCACTCAGAAAATCTCCCAACTTCAAGGCCTCAGAAAACTGAGTCTCCATGACAACCAAATTGGTGGTTCAATCCCTTCATCATTGGGACTTCTTCCCAATCTAAGAGGTGTTCAGCTCTTCAACAACAAGCTAACTGGTTCTGTTCCTCCTTCTTTAGGTTCTTGTCCTTTGCTTCAATCTCTAGACCTCAGCAACAATTTACTCACTGGTCAAATCCCTTCTAGCCTTGGGAATTTAACCAAGCTTTATTGGCTCAACTTGAGCTTCAATTCCTTCAATGGTTCAATACCATCTAGCTTAGCTACTTTACCTTCTTTGACTTTCCTTTCTCTTCAACATAATAATTTCTCAGGCTCAATTCCTAACTCATGGGGTGGTAGCTTCAAGAATGGCTTCTTTAAGCTCCAGAATTTGATCTTAGATCACAACTTCTTGAGTGGAACCATTCCTTCTTTTGGAAGCCTGGTTGAACTCAGAGAGGTTTCTCTTGGTAACAACAATTTTAGTGGAGAAATACCATTTGAAATTGGAAACCTTTCTAGGCTTAAGAAGTTAGATTTTTCTAACAATGCATTCAATGGAAGCTTGCCTGCTACTATATCAAATTTATCCTCACTCACTCTGTTGAATGTAGAGAACAACCACTTTGCTAATCAAATCCCAGAAGCTTTAGGTAGACTACACAATCTTTCTGTTCTGGTTTTGAGTAGAAACCAATTTGTTGGTCACATTCCTCATAGTATTGGAAACATTTCGACGCTTACGCGGCTTGATTTGTCGCTGAATAACATCAGCGGCGAAATTCCAGATTCCTTTGAGAATCTAGCTAGTCTTAATTCCTTCAATGTTTCATACAATAATCTCTCTGGTCCTGTTCCCACATTACTTGCCAACAAATTTAATTCAAGCTCATTTTTGGGAAATATTCAATTATGTGGCTACAACCTTTCAAATCCATGTCCTTCACAAGCTCCTTCACAAGGAGTCATAGTCCCAACTCCTGAATCGTCGAAACAACAGCATCATAAGAAACTAGGCATCAAAGACATAATCCTGATAGCTGCAGGGGTGCTCCTTGTAATCCTGGTAACAATTTGCTGCATCCTGCTTGTCTGCCTTATCAGAAAAAGATCAACATCAGATGCTGAACATGGTCGGGCCACAACAAGAGCTGCCGCAGCAAGGACAGGAAAGGGAATCTCTCCTCCAGCTGCAGCCAGTGACGTAGAAACTGGTGGTGAGAATGGAGGTAAACTAGTCCATTTCGATGGACCGCTGGCTTTTACGGCCGATGACCTCTTGTGTGCAACAGCAGAGATAATGGGAAAAAGCACCTATGGAACTGTCTACAAGGCTACATTGGAAGATGGAACCCAAGCTGCAGTGAAGAGATTGAGGGAAAAGATCACAAAAAGTCAGAGAGAATTTGAGTCTGAAGTTGCTGTGTTAGGGAGAATTAGGCATCCAAATCTTTTGGCATTAAGAGCTTATTACATGGGACCCAAAGGAGAAAAGCTTCTTGTGTTTGATTACATGCCTAATGGAAGTCTTGCTTCCTTCCTACATGCCCGAGGACCAGAAACTGTGATTGATTGGCCAACAAGGATGAAAATAGCACAGGGCATGGCGCGCGGCTTGTTCCACCTTCACTCTCGTGAGAACATCATCCATGGGAACCTCACCTCCAGCAATGTGTTGCTTGATGAGACCACAAATGCCAAGATAGCTGACTATGGTCTTTCCAGGTTGATGACTGCCGCGGCCAACTCCAATGTGATCGCGACGGCCGGGGCATTGGGGTACCGGGCGCCAGAGCTTTCAAAGCTGAAGAAAGCCAACACAAAAACCGATGTATACAGCCTTGGTGTTATCTTGTTAGAACTCCTAACGGGTAAGCCACCGGGCGAGGCTATGAACGGCGTGGATTTGCCTCAGTGGGTTGCCTCCATTGTGAAGGAGGAGTGGACTAATGAGGTGTTTGATGTGGAGTTGATGAGGGATGCATCAACAAATGGGGATGAGTTGCTCAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTACTCCGTCGGCACGGCCAGAAGCACAGCAAGTGCTCCATCAGCTGGAAGAGATTAGGCAAGAGGTAGTATCAGCTAGTTCTGGTGATGATGGAGGCATCCCTTCAACTAGTGAATGA 2559 0.447 MEAGRAQVIAGSHARTDTFLSTGLVISQLGMGNVAHWHHLKWLFLLLLLPLKPVLCDDRWDGVVVTQSNFLALQAFKQELIDPKGFLRSWNDSGYGACSGGWAGIKCAQGEVIVIQLPWKGFKGHITQKISQLQGLRKLSLHDNQIGGSIPSSLGLLPNLRGVQLFNNKLTGSVPPSLGSCPLLQSLDLSNNLLTGQIPSSLGNLTKLYWLNLSFNSFNGSIPSSLATLPSLTFLSLQHNNFSGSIPNSWGGSFKNGFFKLQNLILDHNFLSGTIPSFGSLVELREVSLGNNNFSGEIPFEIGNLSRLKKLDFSNNAFNGSLPATISNLSSLTLLNVENNHFANQIPEALGRLHNLSVLVLSRNQFVGHIPHSIGNISTLTRLDLSLNNISGEIPDSFENLASLNSFNVSYNNLSGPVPTLLANKFNSSSFLGNIQLCGYNLSNPCPSQAPSQGVIVPTPESSKQQHHKKLGIKDIILIAAGVLLVILVTICCILLVCLIRKRSTSDAEHGRATTRAAAARTGKGISPPAAASDVETGGENGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGTQAAVKRLREKITKSQREFESEVAVLGRIRHPNLLALRAYYMGPKGEKLLVFDYMPNGSLASFLHARGPETVIDWPTRMKIAQGMARGLFHLHSRENIIHGNLTSSNVLLDETTNAKIADYGLSRLMTAAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTNGDELLNTLKLALHCVDPTPSARPEAQQVLHQLEEIRQEVVSASSGDDGGIPSTSE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60889g00005 852 Gene3D Ribonuclease Inhibitor 69 181 IPR032675 -
Stsc60889g00005 852 Gene3D Ribonuclease Inhibitor 182 252 IPR032675 -
Stsc60889g00005 852 MobiDBLite consensus disorder prediction 510 538 - -
Stsc60889g00005 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 261 832 - -
Stsc60889g00005 852 SUPERFAMILY Protein kinase-like (PK-like) 565 834 IPR011009 -
Stsc60889g00005 852 ProSiteProfiles Protein kinase domain profile. 561 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60889g00005 852 FunFam Leucine-rich repeat receptor protein kinase EMS1 179 254 - -
Stsc60889g00005 852 SUPERFAMILY L domain-like 106 447 - -
Stsc60889g00005 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 255 450 - -
Stsc60889g00005 852 Pfam Leucine rich repeat 355 414 IPR001611 GO:0005515
Stsc60889g00005 852 Pfam Leucine rich repeat 183 242 IPR001611 GO:0005515
Stsc60889g00005 852 Gene3D Transferase(Phosphotransferase) domain 1 639 844 - -
Stsc60889g00005 852 FunFam Leucine-rich repeat receptor-like protein kinase 546 637 - -
Stsc60889g00005 852 Gene3D Phosphorylase Kinase; domain 1 567 638 - -
Stsc60889g00005 852 SMART LRR_typ_2 305 328 IPR003591 -
Stsc60889g00005 852 SMART LRR_typ_2 133 156 IPR003591 -
Stsc60889g00005 852 SMART LRR_typ_2 329 353 IPR003591 -
Stsc60889g00005 852 SMART LRR_typ_2 229 252 IPR003591 -
Stsc60889g00005 852 SMART LRR_typ_2 401 424 IPR003591 -
Stsc60889g00005 852 SMART LRR_typ_2 157 181 IPR003591 -
Stsc60889g00005 852 Gene3D Ribonuclease Inhibitor 253 453 IPR032675 -
Stsc60889g00005 852 CDD STKc_IRAK 567 832 - -
Stsc60889g00005 852 Pfam Leucine rich repeat N-terminal domain 71 107 IPR013210 -
Stsc60889g00005 852 Pfam Protein tyrosine and serine/threonine kinase 564 829 IPR001245 GO:0004672|GO:0006468
Stsc60889g00005 852 FunFam Pollen receptor-like kinase 1 638 843 - -
Stsc60889g00005 852 FunFam Leucine-rich repeat receptor-like kinase 68 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60889g00005 Stsc-Chr60889 22309 28697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60889g00005 60 833 Receptor kinase-like Gene Family AT3G51740 64.524 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc60889g00005 PK_Tyr_Ser-Thr 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60889g00005 - - gmx:100811174 1278.08