Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60888g00002 | ATGGGGAAGGGAGGCCAAGATTATGGGAGGCAAGAGAAGAAGGAGAAGAGTTCTGATGATTCTTCGGATCGCGACACGTTCAAGGCGTGGGCAAGGGACGTGCGAGAGTGCGAGGAACACTTCAAGGTCAGCGTCAAAACTGGATTGAGCAGTCAAGAGGTTGAGAATCGGAGACGGATCTATGGCTATAACGAGCTCGAGAAGCATGAGGGTCAATCCATCTGGAGTTTGGTCCTGGAGCAGTTCAACGATACCTTGGTTCGGATCCTCCTCGCCGCTGCCATAATTTCCTTTGTTCTCGCCTGGTACGACGGCGAGCATGACGGCGAGAAGGATATCACGGCCTTCGTGGAGCCTCTGGTGATCTTCTTGATTCTGATTGTGAACGCCGTGGTTGGGGTTTGGCAAGAGAGCAACGCGGAGAAGGCTCTAGAAGCCTTGAAGGAGATCCAGTCGGAGCACGCCGCTGTCATCCGTGACAACAAGAAAATCGCTAGCTTGGCGGCGAAGGATCTTGTTCCCGGTGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCCGCGGATATGAGGGTTGTTGAATTGATCAGTTCTACTTTGAGGTTGGAACAGGGATCTTTGACCGGGGAGAGTGAAGCAGTGAACAAGAGCAACAAGCCTGTGGCCGAGGATTCTGATATCCAAGGCAAGAGGTGCATGGTTTTTGCTGGGACGACTGTTGTTAATGGGAATTGCATCTGCTTGGTTACTCAGATCGGCATGGAGACTGAGATTGGGAAGGTGCATCAGCAGATACACGTGGCATCGCAGAGCGAGGAGGATACTCCCTTGAAGAAGAAACTTAATGAGTTTGGAGAGACACTGACTATGATAATTGGGTTGATTTGTATTCTGGTTTGGCTCATCAATGTTAAGTACTTCCTTTCCTGGGAATATGTGGATGGATGGCCCAAGAATTTCAAGTTCTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTTGCTGCTATTCCAGAGGGTTTGCCCGCCGTTATCACAACTTGTTTGGCTTTGGGCACTCGCAAGATGGCGCAGAAGAATGCTCTGGTTCGGAAGCTGCCTAGTGTGGAAACTCTGGGTTGTACAACTGTGATTTGTTCGGATAAGACCGGTACATTGACTACTAACCAGATGTCAGTGACTAAACTAGTAGCTATTGGCCACAATATAGACACATTGCGAGCATTCAAAGTGGATGGAACTACCTACAATCCGGCAGGTGGTAAAATAGAGAACTGGCCGGCTGGTGATATGGATGCTAATCTTCAGATGATAGCGAAAATAGCTGCCATCTGCAATGATGCCGGTGTCACACAGGCTGATAATAAATTTGTTGCTCATGGAATGCCTACAGAAGCGGCCTTGAAGGTTTTGGTAGAGAAGATGGGCCTTCCTAAAGGATCTAAGGATGTAAACTCAGCAAGTACAAGTAGCTTATTACGTTGTTGTGAATGGTGGTCTCAACGTGAACGACGGATTGCCACCCTTGAGTTTGACCGTGATAGAAAATCAATGGGTGTTATTGTAGACTCTAGCGAACGGAAAAAGTCTCTTCTGGTTAAGGGTGCAGTGGAAAATGTTTTGGAAAGAAGCTCTAAAATTCAGCTGCGTGACGGTTCCGTTGTGAAACTTGATGCTAATGCTAGGAAGCTTGTATTGCAAGCTCTTCATGAAATGTCAACTAGTGCTTTGCGTTGTTTGGGATTTGCATATAAGGATGAGCTACGTGAGTTTGAAACTTACAGTGGTAATGATGATCATCCAGCTCACCAGCTCTTGCTTAATCCTTCCAACTATCCATCAATTGAAAGTGAACTTATTTTTGTTGGATTGGTTGGGTTGAGGGATCCACCTAGGGAAGAGGTGCACCAAGCCATCGAAGACTGCAGAGCAGCAGGAATTCGTGTTATGGTTATTACTGGAGACAACAAGAACACTGCAGAAGCTATATGCCGTGAAATAGGTGTATTTAGATCCAATGAAGACCTTAGTTCAAGAAGTTTAACTGGGAAAGACTTTATGGAACTGCGTGATAAAAAAGCTCATCTGAGACAGGATGGTGGGCTCTTGTTTTCAAGGGCTGAACCTAGACACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGACGGTGAGGTGGTGGCCATGACTGGAGATGGTGTTAATGATGCTCCTGCATTGAAGCTTGCTGACATTGGCGTTGCTATGGGTATTACAGGAACAGAGGTTGCAAAGGAAGCTTCTGATATGGTGTTGGCAGATGATAACTTTAGTACCATTGTTGCTGCTGTTGGAGAGGGTAGATCAATCTACAATAACATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATGGGTGAGGTTGCGTCTATATTTCTAACAGCTGCATTAGGTATTCCTGAAGGACTGATACCCGTCCAACTTCTGTGGGTCAATCTTGTGACCGATGGACCCCCAGCAACAGCTTTGGGATTTAATCCTCCTGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTGATTAACATGTGGATCTTATTCCGCTATCTGGNNNNNNNNNNACTTCTCCCCTTTTTTTTTTCCTCCTCTTATAATTGGGCATCATGTTTCAAATGTTGA | 2685 | 0.4596 | MGKGGQDYGRQEKKEKSSDDSSDRDTFKAWARDVRECEEHFKVSVKTGLSSQEVENRRRIYGYNELEKHEGQSIWSLVLEQFNDTLVRILLAAAIISFVLAWYDGEHDGEKDITAFVEPLVIFLILIVNAVVGVWQESNAEKALEALKEIQSEHAAVIRDNKKIASLAAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKSNKPVAEDSDIQGKRCMVFAGTTVVNGNCICLVTQIGMETEIGKVHQQIHVASQSEEDTPLKKKLNEFGETLTMIIGLICILVWLINVKYFLSWEYVDGWPKNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGHNIDTLRAFKVDGTTYNPAGGKIENWPAGDMDANLQMIAKIAAICNDAGVTQADNKFVAHGMPTEAALKVLVEKMGLPKGSKDVNSASTSSLLRCCEWWSQRERRIATLEFDRDRKSMGVIVDSSERKKSLLVKGAVENVLERSSKIQLRDGSVVKLDANARKLVLQALHEMSTSALRCLGFAYKDELREFETYSGNDDHPAHQLLLNPSNYPSIESELIFVGLVGLRDPPREEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFRSNEDLSSRSLTGKDFMELRDKKAHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNMGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINMWILFRYLXXXXLLPFFFSSSYNWASCFKC | 894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60888g00002 | 894 | SUPERFAMILY | Calcium ATPase, transduction domain A | 154 | 263 | IPR008250 | - | |
| Stsc60888g00002 | 894 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 28 | 888 | IPR023298 | - | |
| Stsc60888g00002 | 894 | Gene3D | - | 80 | 878 | - | - | |
| Stsc60888g00002 | 894 | FunFam | Calcium-transporting ATPase, putative | 129 | 266 | - | - | |
| Stsc60888g00002 | 894 | Pfam | Cation transporter/ATPase, N-terminus | 30 | 97 | IPR004014 | - | |
| Stsc60888g00002 | 894 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Stsc60888g00002 | 894 | Gene3D | - | 47 | 268 | - | - | |
| Stsc60888g00002 | 894 | SFLD | p-type atpase | 365 | 786 | IPR044492 | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 734 | 753 | - | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 758 | 770 | - | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 628 | 639 | - | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 384 | 398 | - | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 660 | - | - | |
| Stsc60888g00002 | 894 | PRINTS | P-type cation-transporting ATPase superfamily signature | 203 | 217 | - | - | |
| Stsc60888g00002 | 894 | Gene3D | - | 394 | 635 | IPR023299 | GO:0000166 | |
| Stsc60888g00002 | 894 | Pfam | haloacid dehalogenase-like hydrolase | 627 | 748 | - | - | |
| Stsc60888g00002 | 894 | Gene3D | - | 381 | 779 | IPR023214 | - | |
| Stsc60888g00002 | 894 | SFLD | Haloacid Dehalogenase | 365 | 786 | - | - | |
| Stsc60888g00002 | 894 | Pfam | Cation transport ATPase (P-type) | 449 | 552 | - | - | |
| Stsc60888g00002 | 894 | Pfam | Cation transporting ATPase, C-terminus | 819 | 874 | IPR006068 | - | |
| Stsc60888g00002 | 894 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 391 | 632 | IPR023299 | GO:0000166 | |
| Stsc60888g00002 | 894 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 238 | 410 | - | - | |
| Stsc60888g00002 | 894 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 737 | 881 | - | - | |
| Stsc60888g00002 | 894 | Pfam | E1-E2 ATPase | 150 | 364 | - | - | |
| Stsc60888g00002 | 894 | SMART | Cation_ATPase_N_a_2 | 28 | 102 | IPR004014 | - | |
| Stsc60888g00002 | 894 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 30 | 873 | - | - | |
| Stsc60888g00002 | 894 | NCBIfam | HAD-IC family P-type ATPase | 323 | 405 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc60888g00002 | 894 | NCBIfam | HAD-IC family P-type ATPase | 708 | 815 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc60888g00002 | 894 | NCBIfam | HAD-IC family P-type ATPase | 121 | 311 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc60888g00002 | 894 | FunFam | calcium-transporting ATPase, endoplasmic reticulum-type | 394 | 635 | - | - | |
| Stsc60888g00002 | 894 | SUPERFAMILY | HAD-like | 625 | 838 | IPR036412 | - | |
| Stsc60888g00002 | 894 | FunFam | Calcium-transporting P-type ATPase, putative | 630 | 779 | - | - | |
| Stsc60888g00002 | 894 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 386 | 392 | IPR018303 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60888g00002 | Stsc-Chr60888 | 7418 | 14291 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60888g00002 | 1 | 872 | Primary Pumps ATPases(2) | AT1G07670 | 79.472 | 0.0 | 1409 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60888g00002 | K01537 | - | gmx:100788807 | 1531.15 |