Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60887g00006 ATGGGTGAATCGTCGTTACCAAGTGACCAGTTGGGTGAGTCTTCGGCGGTTGAGTTAACGGGAAAGATCATGGTGGTGGCCGTTATAGTCTTGTTCATGGTGGTTGTGTTTGTGTTGTTCCTTCATCTCTACGCCAAATGGTTCTGGTGGACAATTGGAGAGAGCAACATTCCCCAACCCAGAAGGCGGCGCCGCCGTTTTGTGTTTGCTCCTGCTCAAGACCCTCCCAACTACGGCGCTGTCCGAAGAGGCCTTGACCCTTCTGTCCTGAGATCACTACCTGTGTTGGTGTTCAATCCACAAGATTTCAAGGAAGGTATGGAATGTGCTGTTTGCTTGTCTGAGGTTGGAGAGGGAGAAAAGGCGAGGCTTCTACCAAAATGCAATCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCAACTTGCCCTCTCTGCAGAAACCCTGTCACCTCTGCCACTGAATCTGAATCTTCTGAGGCAGCTTTTCCCACGAATGTCTTTGTCTGGGGCAACCAGACTCATGTGAGTTCTAATGGTGGTTCTTTGGAAGAAAGTAGTGCTTCTTCGTCCTCTTCAGCTAGCAGCAGTGACAGAGTTCATCATGGTGTGGGTGGATCCTTGGTGATTGATATACCAAGCGAGATGACTTCATCTTCTGCAAGCAGGTTTTCTGAAGAAGATGAGATGAAATCACCCATTACAGGAAGATTGAAGTCATTGAAGAGGTTGTTGAGCAGGGACAGGAGGATGATGAATCCCTCTAGTCCCCGTTCTTTAGACGTTGAACAAGCAGCGGGAGCAGGACAGAGCTAG 828 0.4879 MGESSLPSDQLGESSAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWTIGESNIPQPRRRRRRFVFAPAQDPPNYGAVRRGLDPSVLRSLPVLVFNPQDFKEGMECAVCLSEVGEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSATESESSEAAFPTNVFVWGNQTHVSSNGGSLEESSASSSSSASSSDRVHHGVGGSLVIDIPSEMTSSSASRFSEEDEMKSPITGRLKSLKRLLSRDRRMMNPSSPRSLDVEQAAGAGQS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60887g00006 275 Pfam Ring finger domain 108 151 IPR001841 -
Stsc60887g00006 275 CDD RING-H2_EL5-like 108 151 - -
Stsc60887g00006 275 FunFam RING-H2 finger protein ATL3 77 156 - -
Stsc60887g00006 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
Stsc60887g00006 275 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Stsc60887g00006 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 208 - -
Stsc60887g00006 275 SUPERFAMILY RING/U-box 89 157 - -
Stsc60887g00006 275 SMART ring_2 109 150 IPR001841 -
Stsc60887g00006 275 MobiDBLite consensus disorder prediction 182 204 - -
Stsc60887g00006 275 MobiDBLite consensus disorder prediction 226 253 - -
Stsc60887g00006 275 MobiDBLite consensus disorder prediction 182 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60887g00006 Stsc-Chr60887 30102 31300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60887g00006 18 257 C3H Transcription Factor Family AT1G53820 39.796 2.15e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60887g00006 - - adu:107491762 407.527