Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60886g00005 ATGAGCACTTCACAGGCTGTTATTACATGCAAAGCTGCAGTGTGCTGGGGCTTAGGAATGGCAGTAAAGCTTGAAGAGATTCAAGTTGATCCACCAAAATCAGGTGAAGTTCGAGTTAAAATGCTCTGTGCTAGCATCTGCCACACTGATATTTCAGGCATTCAAGGATCCCCGTATGTTAATGGTTTCCCTCTAGTACCTGGACATGAAGGAGTTGGTGTTGTAGAGACAGTTGGAGATAAAGTCACAAATCTGAAAGAAGGGGACATGGTGATTCCAACATATATAGGAGAGTGTGGACATTGCAGGAATTGTGTTTCAGGAAAGACCAACTTGTGCATCACATACCCTTTCAGAGTTACTGGCTTGATGCCAGATAACACTTCAAGAATGTCCTGCAGAGGCAACAAGTTACAGCACACTTGGACTTGCGCCACGTGGTCGGAGTACACGGTTGTCAATGCCAATTACCTTCTCAAGGTTGATCCAGGCATCAATCTAGCCCATGCCAGCTTCATCTCATGTGGGTTTTCAACTGGCTTTGGAGCTGCATGGAAGGAAGCCCAAGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGCGGAGCGAAAATGCTGGGGGCAACTAAGATAATAGGGATTGACACAAATGAGATGAAGAGAGAAAAAGGGAAAGCTTTTGGAATGACTGATTTTATAAATCCTCAAGATTCTGATAAATCTTCATCTGAATTGGTGAAGGAACTGAGTGATGGAGCTGGCGTTGATTATTCTTTTGAGTGCACTGGAGTTGCGCCTTTGCTTAGTGAATCCTTAAATGCCACAAAAATGGGAACCGGTAAAGCAATAACAATTGGTGCACCAAATGAACCTATTGTGCCTTTCAATCATACAGCAATTCTGGCTGGCAGAACTCTGAAGGGTTCTGTTTTTGGAGGTCTAAAAGCCATATCGGACCTTTCAATTGTAGCTGACAAATGCCTAAAGGAGGAGTTCCCTCTTCAGGAGCTATACACACATGAGGTCCCATTGATAGATATAAGCAAAGCATTTGATCTATTGAAAGAGCCAAATTGTGTGAAAGTTGTCATCAAGATATGA 1128 0.4317 MSTSQAVITCKAAVCWGLGMAVKLEEIQVDPPKSGEVRVKMLCASICHTDISGIQGSPYVNGFPLVPGHEGVGVVETVGDKVTNLKEGDMVIPTYIGECGHCRNCVSGKTNLCITYPFRVTGLMPDNTSRMSCRGNKLQHTWTCATWSEYTVVNANYLLKVDPGINLAHASFISCGFSTGFGAAWKEAQVESGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDTNEMKREKGKAFGMTDFINPQDSDKSSSELVKELSDGAGVDYSFECTGVAPLLSESLNATKMGTGKAITIGAPNEPIVPFNHTAILAGRTLKGSVFGGLKAISDLSIVADKCLKEEFPLQELYTHEVPLIDISKAFDLLKEPNCVKVVIKI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60886g00005 375 Gene3D - 14 370 - -
Stsc60886g00005 375 PANTHER ALCOHOL DEHYDROGENASE 6 367 - -
Stsc60886g00005 375 SUPERFAMILY GroES-like 5 199 IPR011032 -
Stsc60886g00005 375 Gene3D - 180 318 - -
Stsc60886g00005 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc60886g00005 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Stsc60886g00005 375 Pfam Alcohol dehydrogenase GroES-like domain 35 161 IPR013154 -
Stsc60886g00005 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 335 IPR036291 -
Stsc60886g00005 375 Pfam Zinc-binding dehydrogenase 203 322 IPR013149 -
Stsc60886g00005 375 FunFam alcohol dehydrogenase 1-like isoform X1 18 179 - -
Stsc60886g00005 375 CDD liver_alcohol_DH_like 8 374 - -
Stsc60886g00005 375 SMART PKS_ER_names_mod 19 373 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60886g00005 Stsc-Chr60886 14803 16739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60886g00005 36 335 Monolignol Biosynthesis Gene Families AT4G37990 27.451 2.61e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60886g00005 K00121 - gmx:100798341 562.762