Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60886g00004 ATGAGCACTTCACAGGCTGTTATTACATGCAAAGCTGCAGTGTGCTGGGGCTTAGGAATGGCAGTAAAGCTTGAAGAGATTCAAGTTGATCCACCAAAATCAGGTGAAGTTCGAGTTAAAATGCTCTGTGCTAGCATCTGCCACACTGATATTTCAGGCATTCAAGGATCCCCGTATGTTAATGGTTTCCCTCTAGTACCTGGACATGAAGGAGTTGGTGTTGTAGAGACAGTTGGAGATAAAGTCACAAATCTGAAAGAAGGGGACATGGTGATTCCAACATATATAGGAGAGTGTGGACATTGCAGGAATTGTGTTTCAGGAAAGACCAACTTGTGCATCACATACCCTTTCAGAGTTACTGGCTTGATGCCAGATAACACTTCAAGAATGTCCTGCAGAGGCAACAAGTTACAGCACACTTGGACTTGCGCCACGTGGTCGGAGTACACGGTTGTCAATGCCAATTACCTTCTCAAGGTTGATCCAGGCATCAATCTAGCCCATGCCAGCTTCATCTCATGTGGGTTTTCAACTGGCTTTGGAGCTGCATGGAAGGAAGCCCAAGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGCGGAGCGAAAATGCTGGGGGCAACTAAGATAATAGGGATTGACACAAATGAGATGAAGAGAGAAAAAGGGAAAGCTTTTGGAATGACTGATTTTATAAATCCTCAAGATTCTGATAAATCTTCATCTGAATTGGTGAAGGAACTGAGTGATGGAGCTGGCGTTGATTATTCTTTTGAGTGCACTGGAGTTGCGCCTTTGCTTAGTGAATCCTTAAATGCCACAAAAATGGTTAGTTTCACTTCTGTCAAGTAA 882 0.4365 MSTSQAVITCKAAVCWGLGMAVKLEEIQVDPPKSGEVRVKMLCASICHTDISGIQGSPYVNGFPLVPGHEGVGVVETVGDKVTNLKEGDMVIPTYIGECGHCRNCVSGKTNLCITYPFRVTGLMPDNTSRMSCRGNKLQHTWTCATWSEYTVVNANYLLKVDPGINLAHASFISCGFSTGFGAAWKEAQVESGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDTNEMKREKGKAFGMTDFINPQDSDKSSSELVKELSDGAGVDYSFECTGVAPLLSESLNATKMVSFTSVK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60886g00004 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 286 IPR036291 -
Stsc60886g00004 293 FunFam alcohol dehydrogenase 1-like isoform X1 18 179 - -
Stsc60886g00004 293 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc60886g00004 293 Pfam Alcohol dehydrogenase GroES-like domain 35 161 IPR013154 -
Stsc60886g00004 293 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 292 - -
Stsc60886g00004 293 SUPERFAMILY GroES-like 5 199 IPR011032 -
Stsc60886g00004 293 Gene3D - 191 291 - -
Stsc60886g00004 293 Gene3D - 5 190 - -
Stsc60886g00004 293 PANTHER ALCOHOL DEHYDROGENASE 6 286 - -
Stsc60886g00004 293 Pfam Zinc-binding dehydrogenase 203 285 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60886g00004 Stsc-Chr60886 14803 16739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60886g00004 36 232 Monolignol Biosynthesis Gene Families AT4G37980 31.313 3.06e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60886g00004 K00121 - gmx:100798341 423.32