Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60882g00004 ATGAAGAGAGAAATAGATCAAATAGTAGAGAGCAATAATAATATTGATTTGGCGAATTGCCTTATGCTTTTGTCTAATCCAATTATTGGCAAGAGAAGAAGCATGAACAATAATAATAGCAATGGTGAATTCGAGTGCAAGACATGTAAGCGAAAGTTCCCATCGTTTCAAGCCCTTGGAGGGCATAGAACAAGCCACAACAAGAAGCCAAAGCTGGAAGGAGAAGAAGAACTGAAAGCACAAGGCAAGACACTTACATTGGGTAACAAGTCGAAGATGCACGAGTGCTCCATTTGTGGCCAAGAATTCTCGCTTGGTCAGGCACTTGGAGGCCACATGAGAAGGCACAGATCACAAAATAACAATAATCATGGATTCATTATTCATGATCAACAACAACAACTAGTGTCTTCTTCTATGAAGGATGATGATATTAAACTTGTTGTTGCTAAAGTTCCTGTTTTCAAGAGATCTAACAGTCTCAGAGTTAGGTGCTTGGATTTGAACCTAACACCATTAGAGAATGACTTGAAGGTGCTCTTTGGAAATATTGCTCCTAATAAGCTTCATGCCTTAGTTTAG 582 0.39 MKREIDQIVESNNNIDLANCLMLLSNPIIGKRRSMNNNNSNGEFECKTCKRKFPSFQALGGHRTSHNKKPKLEGEEELKAQGKTLTLGNKSKMHECSICGQEFSLGQALGGHMRRHRSQNNNNHGFIIHDQQQQLVSSSMKDDDIKLVVAKVPVFKRSNSLRVRCLDLNLTPLENDLKVLFGNIAPNKLHALV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60882g00004 193 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Stsc60882g00004 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Stsc60882g00004 193 SMART c2h2final6 94 116 IPR013087 -
Stsc60882g00004 193 SMART c2h2final6 44 66 IPR013087 -
Stsc60882g00004 193 Pfam C2H2-type zinc finger 44 68 - -
Stsc60882g00004 193 Pfam C2H2-type zinc finger 94 119 - -
Stsc60882g00004 193 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Stsc60882g00004 193 SUPERFAMILY beta-beta-alpha zinc fingers 44 116 IPR036236 -
Stsc60882g00004 193 Gene3D Classic Zinc Finger 41 116 - -
Stsc60882g00004 193 PANTHER ZINC FINGER PROTEIN ZAT5 11 176 - -
Stsc60882g00004 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60882g00004 Stsc-Chr60882 15584 16273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60882g00004 1 189 C2H2 Transcription Factor Family AT2G37430 44.041 5.11e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60882g00004 zf-C2H2_6 6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60882g00004 - - gmx:100527151 188.734