Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60882g00003 ATGAAGAGACAGAGAGAAACTGAAGGCTATTATTCTTCTTCAGTAGTAGAGAGCATTGATTTGGCCAAATGCCTAATGCTACTTCCTCTTCTCCAAGAAAGCAGCAACAAGGCATCATCAGTGCATCATAGAAATAGCAATAATAATGGCTCTTGTGTGGAGTTTGAGTGCAAGACTTGCAACCGCAAGTTCTCTTCGTTTCAGGCACTGGGAGGGCACAGGGCTAGCCACAAGAGGCAGAAGGTAGAAGATGGTGAAGAAGAGCTTAAGCAGCAAGCCAAATCATTGAGCCTCTGGAACAAGCCGAAGATGCACGAGTGCTCCATTTGTGGCCTCAAATTCTCTTTAGGCCAAGCACTCGGTGGTCACATGAGAAAACACAGAGGATTAGGTCATGAATCATCAATAATCAAGCATGTTATTGAGAAAACCCCGGTTCTTATGAGATCTAATAGCAAGAGGATTGCGTGCCTAAACTTGGATTTGAACTTATCACCGTTCGAGCACCATGATGATTCCTTTGCCACCAACAAGAAAACCATCCCGCCGGTTCCTCTTTCTTTCTTCTGA 570 0.4456 MKRQRETEGYYSSSVVESIDLAKCLMLLPLLQESSNKASSVHHRNSNNNGSCVEFECKTCNRKFSSFQALGGHRASHKRQKVEDGEEELKQQAKSLSLWNKPKMHECSICGLKFSLGQALGGHMRKHRGLGHESSIIKHVIEKTPVLMRSNSKRIACLNLDLNLSPFEHHDDSFATNKKTIPPVPLSFF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60882g00003 189 SUPERFAMILY beta-beta-alpha zinc fingers 55 127 IPR036236 -
Stsc60882g00003 189 SMART c2h2final6 55 77 IPR013087 -
Stsc60882g00003 189 SMART c2h2final6 105 127 IPR013087 -
Stsc60882g00003 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Stsc60882g00003 189 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Stsc60882g00003 189 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Stsc60882g00003 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 129 IPR013087 -
Stsc60882g00003 189 PANTHER ZINC FINGER PROTEIN ZAT5 2 169 - -
Stsc60882g00003 189 Pfam C2H2-type zinc finger 55 80 - -
Stsc60882g00003 189 Pfam C2H2-type zinc finger 105 128 - -
Stsc60882g00003 189 Gene3D Classic Zinc Finger 52 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60882g00003 Stsc-Chr60882 7627 8672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60882g00003 1 188 C2H2 Transcription Factor Family AT2G37430 42.105 9.65e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60882g00003 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60882g00003 - - aip:107648719 290.426