Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60879g00001 ATGGAGTCAGAGCGAGACAAGTACAGAATGATAAATTTTGAGGAGACCGAGTTGCGACTCGGTCTGCCTGGCGGGTCGAACGACGGCGAGTCATCTCTCAGGAACACTTGTACTACTACAGCAACTGGGAAGAGGGGTTTCTCGGAGACTACTGCTGCGACTAACGTGGATTTGAAGCTGAATCTGAATCTTTGTTCCTCTTCCTGTTCTTCTTCTCTTAATAATAATAATAATAATGACTCCTTTTCAATTTCATCTGTCAACCTTGACAAGAACAAGGAGAAGAATGGTAGTGCTTCTACTCCAACTTCTTCACCTCCTGTTACTCGTTCTAACGACCCCGCGAAACCACCTGCCAAGGCACAAGTGGTAGGTTGGCCACCAGTTAGATCCTTCAGAAAGAACATAGTGAGCGGCCAAAAGAGCAACAAAGAAGAAACAGAAAAGGTGGCCGTCACAGCCGCCGCGACGACCACCACGGCGGTGGGTCCAAGCACAGGCAGCAACGGAGGAGGGGCATACGTGAAGGTGAGCGTGGAGGGAGCACCATACCTTCGAAAAGTGGACCTGAAGCAATACAAGAGCTACAGAGAGCTGTCAGATGCGCTGGGAAAGATGTTCAGTGCCACCATCATAGACTCCGCTGTCAGTGGGGCCCAATGCCAACCCCATCACGATGGCAAAGGAAATGGCCTCTTCACCTTCAATGGCTCTGACTATGTCCCCACTTATCAAGACAAAGACGGTGATTGGATGCTCGTTGGTGACGTGCCTTGGGAAATGTTCGTTGAATCATGCAAGCGCCTTCGTATAGTGAAAGGTTCCGAGGCAATTGGGCTAGGAGCTACTCCAAGAGCCGCAGCGGAAGAGAAGTGTAAGATCAGAAGCTGA 891 0.5006 MESERDKYRMINFEETELRLGLPGGSNDGESSLRNTCTTTATGKRGFSETTAATNVDLKLNLNLCSSSCSSSLNNNNNNDSFSISSVNLDKNKEKNGSASTPTSSPPVTRSNDPAKPPAKAQVVGWPPVRSFRKNIVSGQKSNKEETEKVAVTAAATTTTAVGPSTGSNGGGAYVKVSVEGAPYLRKVDLKQYKSYRELSDALGKMFSATIIDSAVSGAQCQPHHDGKGNGLFTFNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCKRLRIVKGSEAIGLGATPRAAAEEKCKIRS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60879g00001 296 Gene3D - 167 285 - -
Stsc60879g00001 296 MobiDBLite consensus disorder prediction 91 122 - -
Stsc60879g00001 296 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 279 IPR003311 GO:0005634|GO:0006355
Stsc60879g00001 296 MobiDBLite consensus disorder prediction 20 43 - -
Stsc60879g00001 296 MobiDBLite consensus disorder prediction 91 110 - -
Stsc60879g00001 296 ProSiteProfiles PB1 domain profile. 172 274 IPR000270 GO:0005515
Stsc60879g00001 296 MobiDBLite consensus disorder prediction 28 43 - -
Stsc60879g00001 296 SUPERFAMILY CAD & PB1 domains 169 271 - -
Stsc60879g00001 296 Pfam AUX/IAA family 15 281 IPR033389 -
Stsc60879g00001 296 FunFam Auxin-responsive protein 167 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60879g00001 Stsc-Chr60879 15587 19522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60879g00001 168 281 B3 DNA Binding Superfamily AT5G37020 29.825 1.68e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc60879g00001 AUX_IAA 1.3e-73 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60879g00001 K14484 - gmx:100796888 261.536