Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60878g00003 ATGTGCCGGTGGAGGGACGGCAAATACCACCCTGTCAAGGTCATCGAACGCCGCAAGGTTTCTGCCAGTGACCCCAACGATTACGAGTATTACGTTCATTACACAGAGTTTAATAGAAGGCTTGATGAGTGGGTGAAGCTCGAACAGCTTGATCTTGAGTCAGTAGAGGCTGTTGTTGACGAGAAAGTGGAGGAGAAGGGGGCAACAGGCTTGAAGATGACACGCCACCAGAAGAGGAAGATTGATGAGACACATGTAGAGGGCCACGAGGAGCTTGATGCTGCCAGTTTGCGAGAACATGAGGAATTTACCAAAGTGAAAAATATAGCTACTATTGAACTTGGAAGATATGAGATTGAGACATGGTACTTCTCCCCCTTCCCACCAGAATACAATGACTGTTTGAAGCTGTACTTTTGTGAGTTTTGCCTCAATTTCATGAAACGAAAAGAACAGCTTCAGAGGCATATGAGAAAGTGTGATCTTAAGCATCCCCCTGGTGATGAAATATACAGAAGTGGTACCCTGTCAATGTTTGAGGTTGATGGGAAGAAGAACAAGGTTTATGGACAGAATCTTTGTTATTTGGCAAAGTTGTTTCTCGATCACAAGACCCTCTATTATGATGTGGACCTATTTCTGTTCTATGTTTTGTGTGAATGCGATGATCGAGGATGCCACATGGTTGGCTATTTCTCCAAGGAAAAACATTCTGAGGAATCCTACAATTTGGCATGTATCCTGACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATAGCTTTCTCATATGAACTTTCCAAAAAGGAGGGCAAAGTTGGCACACCGGAAAGACCCCTTTCAGATCTTGGGCTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAAAAGCATAAGGGTAACATCTCCATCAAGGAGCTAAGTGATATGACTGCCATTAAAGCCGAAGATATATTAACAACTCTTCAGAGCCTAGAATTGATCCAATACAGGAAAGGACAACATGTTATTTGTGCAGATCCTAAGGTTCTTGATCGCCATCTTAAAGCTGCTGGTAGAGGGGGTCTTGAGGTTGATGTTAGCAAATTGATTTGGACCCCTTACAAGGAACAAAGTTGA 1143 0.4339 MCRWRDGKYHPVKVIERRKVSASDPNDYEYYVHYTEFNRRLDEWVKLEQLDLESVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60878g00003 380 Gene3D - 1 104 - -
Stsc60878g00003 380 CDD NAT_SF 216 274 - -
Stsc60878g00003 380 Pfam MOZ/SAS family 165 342 IPR002717 GO:0004402|GO:0006355|GO:0016573
Stsc60878g00003 380 FunFam Histone acetyltransferase 163 291 - -
Stsc60878g00003 380 SUPERFAMILY Chromo domain-like 1 105 IPR016197 -
Stsc60878g00003 380 Pfam RNA binding activity-knot of a chromodomain 1 52 IPR025995 -
Stsc60878g00003 380 SMART chromo_7 8 67 IPR000953 -
Stsc60878g00003 380 FunFam Histone acetyltransferase 283 362 - -
Stsc60878g00003 380 Pfam MYST family zinc finger domain 106 160 IPR040706 -
Stsc60878g00003 380 FunFam Histone acetyltransferase 103 160 - -
Stsc60878g00003 380 FunFam Histone acetyltransferase 1 104 - -
Stsc60878g00003 380 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 105 376 IPR016181 -
Stsc60878g00003 380 Gene3D - 105 161 - -
Stsc60878g00003 380 Gene3D - 163 375 - -
Stsc60878g00003 380 PANTHER HISTONE ACETYLTRANSFERASE 3 376 - -
Stsc60878g00003 380 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 104 375 IPR002717 GO:0004402|GO:0006355|GO:0016573
Stsc60878g00003 380 CDD CBD_MOF_like 1 66 - -
Stsc60878g00003 380 Gene3D - 283 363 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60878g00003 Stsc-Chr60878 6947 11229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60878g00003 1 380 C2H2 Transcription Factor Family AT5G64610 92.368 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60878g00003 K11308 - gmx:100819168 770.77