Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60878g00002 ATGTCTCTTCTCATATGGTTTAAGGAAGAAAAACTTATCATTACACCATTTTTCTTCATCTCCACACTAATTATTTTCCTCATTCTATTAGCAAAGCTCCTCTTCCCAAGCAATTCCAGAAAATCCAAAAATAATAGAAATAATCTTCCTCCAAGTCCACCAAAAATTCCCATAATTGGAAACCTCCAGCAACTAGGCACAAACCCCCACATTTCTCTTCAAACCCTTTCACAAAAATATGGACCAATAATTCACCTTCAACTAGGTGAAGTCCCAACAGTGGTTGTTTCATCATCTAAGGTTGCAAAAGAAGTGCTTAAAACACATGATCTTGCACTTGCAAGCCGTCCACAACTATATTCGGCTAAGTACCTTTTCTACAATTGCACTAATGTTGTGTTCTCTCCCTATGGTGCTTATTGGAGGCATATTAGGAAGATTTGCATACTTGAGCTTCTAAGTTCCAAAAGGGTACAATCATGTAGTTCTATTAGGAATCAAGAAGTTGCTCGTTTAGTTCAAAGGGTTATGGAGTCTTGTCCGGAAACATGCAATCTTTCTAGGATGCTTGGATTGTACGCAAATGATGTTCTTTGTCGCGTCGCGTTCGGAAGAGATTTTTCAGTAGATGGAGAGTACCAAAAACATGATTTCCAAAAGATGCTTGATGAGTACCAAGAACTACTTGGAGGGTTCAGTGTTGGTGACTTCTTTCCTTCATTGGAGTTCATACACGGCTTAACCGGCGCGAAGTCGAGGCTTAAAGAAACTTCTAGAAGATTCGATCGGCTCTTTGATCAGATATTGGATGAACATAAGGGATGCAATAATAATAAGATGGAGGAAGAAAAGGATCTTGTTGATGTTTTGCTTGAAGTTCAGAAGAATGGCTCAAATGAAATGCCTCTCACCACTGATAATATCAAAGCAATTATATTGGACATGTTTGCTGCAGGAACTGATACAACATTCATTACCCTTGATTGGGGAATGACAGAGCTTCTAATGAATCCACAAGTTATGAAAAAGGCACAAGAGGAAATTAGAAACATCATGGGAGAAAGAAGAGTTGTCTTAGAAAGTGATCTTCCCCAATTCCACTACATGAAAGCAATCATCAAAGAAGTGTTCCGGCTACACCCTCCGGTGCCGGTTTTAGTCCCGAGAGAATCCATGGAAGACATAGTCCTAGAAGGATACGAAATCCCGGCGAGGACAAGATTCTTTGTCAATGCTTGGGCTATAGGAAGGGATCCCAAGAGTTGGGAAGATCCTAATGAGTTCAAACCAGAGAGGTTCTTAGAAAGTGATGTTGATTATAAAGGGAATGATTTCGAGTTGATTCCGTTTGGTGCAGGAAGAAGAGGGTGTCCTGCGATTGCGTTCGCGGCCGCGGTTGTTGAGCTTGCTTTGGCTCAGTTGCTATATAGTTTTGATTGGGAGCTTCCTCATGGTGTTAAAGTTGAAGATTTGGACCTCACTGAAGTTTTTGGAATCTCCATGCATAGGAGAGAAAATCTTCATGTTGTTGCCAACCCATATTTTGCATAA 1551 0.4043 MSLLIWFKEEKLIITPFFFISTLIIFLILLAKLLFPSNSRKSKNNRNNLPPSPPKIPIIGNLQQLGTNPHISLQTLSQKYGPIIHLQLGEVPTVVVSSSKVAKEVLKTHDLALASRPQLYSAKYLFYNCTNVVFSPYGAYWRHIRKICILELLSSKRVQSCSSIRNQEVARLVQRVMESCPETCNLSRMLGLYANDVLCRVAFGRDFSVDGEYQKHDFQKMLDEYQELLGGFSVGDFFPSLEFIHGLTGAKSRLKETSRRFDRLFDQILDEHKGCNNNKMEEEKDLVDVLLEVQKNGSNEMPLTTDNIKAIILDMFAAGTDTTFITLDWGMTELLMNPQVMKKAQEEIRNIMGERRVVLESDLPQFHYMKAIIKEVFRLHPPVPVLVPRESMEDIVLEGYEIPARTRFFVNAWAIGRDPKSWEDPNEFKPERFLESDVDYKGNDFELIPFGAGRRGCPAIAFAAAVVELALAQLLYSFDWELPHGVKVEDLDLTEVFGISMHRRENLHVVANPYFA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60878g00002 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Stsc60878g00002 516 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 SUPERFAMILY Cytochrome P450 50 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PANTHER CYTOCHROME P450 71B11-RELATED 28 512 - -
Stsc60878g00002 516 CDD CYP71-like 79 507 - -
Stsc60878g00002 516 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 101 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 Gene3D Cytochrome P450 36 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60878g00002 516 FunFam Cytochrome P450 99A2 39 512 - -
Stsc60878g00002 516 Pfam Cytochrome P450 50 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60878g00002 Stsc-Chr60878 3395 5900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60878g00002 24 510 Cytochrome P450 AT3G26310 45.051 6.57e-149 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60878g00002 - - qsa:O6P43_022628 718.768