Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60877g00007 ATGGCATACCTAAAAGCTAGATTGAAAGATGGCATTATCAGTATTTGTTGTATGGTTGTGATGTGGTTGGGTTGTGTCAAGTCCAATAATGGAGAAGGTGAATACATGTTGAAGCTTATGAATGCAGTGAAACCCACTCCATCAGACTGGTCCATAAGCAACCACATTTGCCAATGGAGCGGCGTGACTTGCAACAACCAAACTGGAAGGATTGAAAGGCTCGATCTGAGTTCAATGTCGCTGAGGGGAAGAGTTCCTTCAGGCATCAATGACTCCCTCACACACCTCAAATACCTCGATCTCTCCAACAATTATCTGAGTGGGCCTGTTCCCTCTCTCGCCAACCTCACCTTCCTTGACTCAGTGGCCCTCCAACTCAACAACTTCAACTCCATCCCTCATGGTTGCTTCCATGCTCTAACTAGTTTACACTTCTTGAGCTTGTATAACAATACAAAGCTCCTACCATGGAACTTTCCTACCGATTTGACTGCTCACTCCTCCCAACTCAATGTCATCGACCTCGCTCATACAAATCTCATGGGCTCCGTACCAAACATATCCCACTTCTTCCCAGCTATGCAATCTATTTTTCTCTCTAACAACAACCTCTCCTCTATCCCTGAGGGTTGCTTCCACAACCTAACCAATTTGACTTACCTCTCTTTGTCCAATCACACCAACCTCACACCATGGACCTTCCCTGAGTTGATTCAGTCGAAAGATCTGTTTGAGCTCAATCTTGCTGCTACAAATGTCATGGGCTCCCTACCATCAGAAATATTTCAGTCCATGCCAAATTTGCAGATTGTTGATCTCTCCAACAATAACCTCTCTGGCATCTTGCCGGAGTCTAGAGACTCCAAGATTAACATTTTGCATCTCAACGACCAGAAGGGCAAAGGATTTTCGGGTACAATTGATGTCCTTTCAGATATGTATTACTTGTCTCAAGTGTGGCTTCAGGGGAACTCGTTTGAAGGATCTATCCCTGACTTTTCTAGTTCTACCGCTTTGCAAGATTTACAACTTGCGTACAACCGATTAACAGGTGTGGTTCCAGATTCTCTGATAAGACTAAGTGACATCAATCTGCAAAGTATCTCTTTGAACAACAACTTTTTGCAGGGTCCTGTACCTCGCTTTTACATTGGTTCTGACAACGACACAAATTCCTTTTGTCGAAACAATTATGAGCCTTGTGACCAGAGAGTTACCATTTTGCTTGAAATTGCTTCCGCATTTGGATATCCTTATTTGTTGGCACGTTCATGGCGAGGGAATAATCCATGTCATAATTGGAGTTTCGTTGCATGTACCGGGGATATGATTACAACCGTGAATTTGACGAGGCTGAATTTGAATGGAACAATCTCACCTGCATTTGCTAACTTAACTCATTTGGAAAACTTGTATCTCAGTGGCAACAATTTAAATGGCTCAATACCTCAAAACTTGACAACTCTTGATCAACTCAAGAATCTCGATGTCTCCAATAACAACTTATCGGGAAAAATTCCCAATTTCTCAAGTCGAGTAAACCTCAATACTAAAGGCAATCCTTCCTTCCACATAAGAAATCCTTCTATCGTGAAAAGAAATCCACATGCTTGGATCCCAGGCCTATCAGCAGCAATTGTTGTTGGGATCCTTTTAACATTTGTTGTGGTTATTTACAAAAGCAAGAGGTTACAGAAAATCTTGTTCAAGAGAACAACCGTTGATCGCAATGTTGAGGATTTGATACAAAGTCATAGGTTTATGGTGCACAAACGATATAGTTATTCACAGCTGAAAAGGATTACCAATTCATTTCGTGAGAAGCTAGGACAAGGAGGTTTTGGCGCTGTGTATAAGGGAACTTTGAGTGATGGTCGTCAAGTAGCTGTGAAGATTTTGAAGGAATCTGAAGGTAATGGAGAAGATTTCATAAATGAGGTTGCAAGTATTAATAGAACATCCCATGTGAATATTGTCCCATTTTTAGGTTTTTGTTATGAGACAAATAAAAGAGCATTGATTTATGAATTCATGCCAAACGGCTCTTTAGATAAATTTGTTGATGAAAAAGTATCATTTTGTGTGGTGGGTAAATTAGATTGGAGTAGAGTCTACCAAATTATAATTGGTATTGCTCGGGGACTAGAATATTTACATTGGGGATGTAGTACCAAGATTTTACATCTTGATATTAAACCTCAGAATATTCTTTTGGACGAGGATTTTGTTCCCAAAATTGCTGATTTTGGATTAGCTAAACTATGCACAAAGAAAGAGAGCATTATATCTCTACAATGTGCAAGAGGAACTCCAGGATATATTGCACCAAAAGTATATAATCAAATATATTCGGGAGTATCTCGACGAGTTTCTGATAAATTTGATGTGTATAGTTACGGGAGATTGATTCTTGCAGTAGTCGGAGGGAAAAAGAATTATAATAGTAGAGACTCCCAAGCCAGTGAAATGTTTTTTACAGAGTGGATTTATAAGGAATTGGAAACAGATAATCTTCCAATAAGATGCCTGATGAACACAAAGGATGAAAATGATGATGAGTTGGTAAAGAAGATTATTTTGGTTGGCTTGTGGTGTATACAAAGAAATCCATCAGAGAGACCATCCATGAAAAGAGTAATAGAAATGTTAGAAGGACCACTTGATTCTATCCCATTTCCTCCAAAACCATTGTGGTGTTCTCCCCAAGGATCAAGGTTGCAATCTCCAGATATAGCTTGTGACAATACAAATGAGACAGATTCATTAACTTCAGTGGAGAATGATCCCATCAATCCAGAAGGCAATGATCAGTGCAGCAAATGCACTGGTTCAGGTGGCCTGTGTGGCAGCGATGGCGATGGACATTTCTCCTGTCTCTGTAATGATGGATTTCATTCCAATTCTTGTTCAGAGTCATCTTCAAAGTGGAACTGGCGCCTTAAGACTGCTATAGGTGCAACAACAGCTGGTGTTGGAATTGTTGTAGTCTTTGCTGTGATCATTTGCAACCGCATGAGATACTTCAATTTATCACAAAGGAGATTAATCGTTAAGGAAACAGGGGAATCTGATGACCAGAATGTGGAGGATTTCATCACAACTTATGGCTTTCTAGCCCCAAAGAGATATAATTATTCAGAAGTGAAGAAAATCACAAATTCATTTTGTGATCAACTAGGCAAAGGAGGATATGGTGTTGTGTACAAAGGAAAGTTATCCAATGGACGTCTTGTTGCAGTGAAAGTGATAAATGAATCAAAAGGGAGCGGAGAAGAATTCATAAATGAAGTTGCTAGTATCAGTAGAACATCTCATGTGAACATTGTCTCACTTTTGGGATTTTGTAATGAAGGAAATAAAAGAGCACTTATCTATGAGTTCGTCTTTAATGGCTCATTAGATAGGTTCATCTATGACAGTGGATCATCAACTCTTACTTGTAATTTGGATTGGAACACATTGTATCAAATTGCAATTGGCATTGCCCGCGGACTAGAGTATTTGCATAGAGGATGTGGTACAAGAATTTTGCATCTTGATATTAAACCTCAGAATATTCTCTTGGACGAAGACTTCTGTCCTAAAATCTCTGATTTTGGATTAGCCAAGATATGTCAAAAGAAAGAGAGTATTGTGTCCATATTGGGAACAAGAGGAACTATTGGATATATTGCACCTGAAGTATTTAGTCGAATGTATGGTGGTGTTTCGCATAAGTCTGATGTATATAGCTATGGCATGTTAATTCTTGAAATGGTTGGAGGAAGACAGAATTACGAAAGTGAAGGGTCAAATTCTAGCGAAATGTACTTTCCAGACTGGATTTACAAAGATCTAGAGCAAGGTAATATACCATCTCATATTCGCTCACTTGTGACAGATGAAGAAAATGATCTGGTAAAGAAAACTACTTTGGTGAGTTTATGGTGCATTCAAACAAATCCATCAGAAAGACCATCAATAAACAAAGTAGTAGAGATGTTAGAAGGAGAGTTGCACTCAATACCGTTTCCTCCTAAGCCTTTCTTGTATTCTACTTCAAGTCTACCATTGCAAATTTCACATACTTCTTCCAGCAACATGGATGAATCAAATGAAGCAAAAGACAGAAAGGCTGTGATAATTGCTGATGATTTAGATTCTTGA 4146 0.3917 MAYLKARLKDGIISICCMVVMWLGCVKSNNGEGEYMLKLMNAVKPTPSDWSISNHICQWSGVTCNNQTGRIERLDLSSMSLRGRVPSGINDSLTHLKYLDLSNNYLSGPVPSLANLTFLDSVALQLNNFNSIPHGCFHALTSLHFLSLYNNTKLLPWNFPTDLTAHSSQLNVIDLAHTNLMGSVPNISHFFPAMQSIFLSNNNLSSIPEGCFHNLTNLTYLSLSNHTNLTPWTFPELIQSKDLFELNLAATNVMGSLPSEIFQSMPNLQIVDLSNNNLSGILPESRDSKINILHLNDQKGKGFSGTIDVLSDMYYLSQVWLQGNSFEGSIPDFSSSTALQDLQLAYNRLTGVVPDSLIRLSDINLQSISLNNNFLQGPVPRFYIGSDNDTNSFCRNNYEPCDQRVTILLEIASAFGYPYLLARSWRGNNPCHNWSFVACTGDMITTVNLTRLNLNGTISPAFANLTHLENLYLSGNNLNGSIPQNLTTLDQLKNLDVSNNNLSGKIPNFSSRVNLNTKGNPSFHIRNPSIVKRNPHAWIPGLSAAIVVGILLTFVVVIYKSKRLQKILFKRTTVDRNVEDLIQSHRFMVHKRYSYSQLKRITNSFREKLGQGGFGAVYKGTLSDGRQVAVKILKESEGNGEDFINEVASINRTSHVNIVPFLGFCYETNKRALIYEFMPNGSLDKFVDEKVSFCVVGKLDWSRVYQIIIGIARGLEYLHWGCSTKILHLDIKPQNILLDEDFVPKIADFGLAKLCTKKESIISLQCARGTPGYIAPKVYNQIYSGVSRRVSDKFDVYSYGRLILAVVGGKKNYNSRDSQASEMFFTEWIYKELETDNLPIRCLMNTKDENDDELVKKIILVGLWCIQRNPSERPSMKRVIEMLEGPLDSIPFPPKPLWCSPQGSRLQSPDIACDNTNETDSLTSVENDPINPEGNDQCSKCTGSGGLCGSDGDGHFSCLCNDGFHSNSCSESSSKWNWRLKTAIGATTAGVGIVVVFAVIICNRMRYFNLSQRRLIVKETGESDDQNVEDFITTYGFLAPKRYNYSEVKKITNSFCDQLGKGGYGVVYKGKLSNGRLVAVKVINESKGSGEEFINEVASISRTSHVNIVSLLGFCNEGNKRALIYEFVFNGSLDRFIYDSGSSTLTCNLDWNTLYQIAIGIARGLEYLHRGCGTRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSILGTRGTIGYIAPEVFSRMYGGVSHKSDVYSYGMLILEMVGGRQNYESEGSNSSEMYFPDWIYKDLEQGNIPSHIRSLVTDEENDLVKKTTLVSLWCIQTNPSERPSINKVVEMLEGELHSIPFPPKPFLYSTSSLPLQISHTSSSNMDESNEAKDRKAVIIADDLDS 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60877g00007 1381 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Stsc60877g00007 1381 Gene3D Ribonuclease Inhibitor 35 141 IPR032675 -
Stsc60877g00007 1381 Gene3D Ribonuclease Inhibitor 402 526 IPR032675 -
Stsc60877g00007 1381 FunFam Suppressor of npr1-1 constitutive 4 575 677 - -
Stsc60877g00007 1381 FunFam PR5-like receptor kinase 1128 1338 - -
Stsc60877g00007 1381 SUPERFAMILY L domain-like 42 380 - -
Stsc60877g00007 1381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672|GO:0006468
Stsc60877g00007 1381 ProSiteProfiles Protein kinase domain profile. 603 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 Gene3D Ribonuclease Inhibitor 155 401 IPR032675 -
Stsc60877g00007 1381 Gene3D Phosphorylase Kinase; domain 1 1026 1127 - -
Stsc60877g00007 1381 Gene3D Phosphorylase Kinase; domain 1 576 677 - -
Stsc60877g00007 1381 PANTHER OSJNBA0070M12.3 PROTEIN 193 884 - -
Stsc60877g00007 1381 ProSitePatterns Protein kinases ATP-binding region signature. 1059 1081 IPR017441 GO:0005524
Stsc60877g00007 1381 Pfam Leucine rich repeat 169 225 IPR001611 GO:0005515
Stsc60877g00007 1381 Gene3D Transferase(Phosphotransferase) domain 1 1129 1337 - -
Stsc60877g00007 1381 ProSiteProfiles Protein kinase domain profile. 1053 1343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 SUPERFAMILY Protein kinase-like (PK-like) 1032 1329 IPR011009 -
Stsc60877g00007 1381 ProSitePatterns EGF-like domain signature 2. 958 969 IPR000742 -
Stsc60877g00007 1381 Pfam Protein kinase domain 606 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 Pfam Protein kinase domain 1057 1326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 Gene3D Transferase(Phosphotransferase) domain 1 678 889 - -
Stsc60877g00007 1381 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Stsc60877g00007 1381 CDD STKc_IRAK 1059 1330 - -
Stsc60877g00007 1381 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Stsc60877g00007 1381 SUPERFAMILY Protein kinase-like (PK-like) 580 883 IPR011009 -
Stsc60877g00007 1381 ProSiteProfiles Leucine-rich repeat profile. 491 513 IPR001611 GO:0005515
Stsc60877g00007 1381 FunFam S-receptor-like serine/threonine-protein kinase 1022 1127 - -
Stsc60877g00007 1381 FunFam PR5-like receptor kinase 678 893 - -
Stsc60877g00007 1381 FunFam Leucine-rich repeat receptor-like kinase 403 526 - -
Stsc60877g00007 1381 SMART LRR_sd22_2 93 118 - -
Stsc60877g00007 1381 SMART LRR_sd22_2 465 488 - -
Stsc60877g00007 1381 SMART LRR_sd22_2 489 511 - -
Stsc60877g00007 1381 SMART serkin_6 1053 1328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 SMART serkin_6 603 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00007 1381 Pfam Leucine rich repeat N-terminal domain 405 439 IPR013210 -
Stsc60877g00007 1381 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Stsc60877g00007 1381 SUPERFAMILY L domain-like 404 509 - -
Stsc60877g00007 1381 SMART LRR_typ_2 465 489 IPR003591 -
Stsc60877g00007 1381 SMART LRR_typ_2 191 214 IPR003591 -
Stsc60877g00007 1381 SMART LRR_typ_2 93 115 IPR003591 -
Stsc60877g00007 1381 SMART LRR_typ_2 265 288 IPR003591 -
Stsc60877g00007 1381 SMART LRR_typ_2 116 139 IPR003591 -
Stsc60877g00007 1381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1176 1188 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60877g00007 Stsc-Chr60877 27763 34101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60877g00007 541 897 Receptor kinase-like Gene Family AT1G66910 51.381 9.03e-111 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60877g00007 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60877g00007 - K00924 aip:107635702 1011.13