Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60877g00006 ATGGCATACCTGAAATCAGAATCCAAAATTCCTAGTGGCTTTTGTTATGCTCTTGTGCTCTTGTTCTCTTCCTTGTTCATGACCTCTGTCCTTTGTGATGAAGCTGGTGATGAAGGTGAATACATGATGAAGCTTATGAATGCACTCAATCCCCCTGGCTGGTCCAACACCAGCCACATGTGCAACTGGACAGGGGTGATCTGCAACAGTCAAACTGGAAGGATTGAAGGGCTTGCTCTCAGTTATATGTCATTGACGGGAACAGTTCCTTCAGGCCTCAATGACTCCCTCACACAACTCACATCCCTCTTTCTCTACAACAATTTCCTGAGTGGGCCTCTTCCCTCTCTTGCCAACCTCACCTTCCTTCAACAAGTGATCCTCGACAACAACAACTTCAACTCCATCCCTCATGGTTGCTTCCATGCTCTAACTAGTTTAAACTTGTTGAGCTTGTATAACAATAGCAAGCTCCCAGCATGGAACTTCCCTACCGATTTGACTGCTCACTCCTCCCAACTCAAGCTCCTCGACCTATCTTATACAAATCTCATGGGCTCCGTACCAAACATATCCCACTTCTTCCCAGCTATGCAAGCTCTTTATCTCTCTAACAACAACCTCTCCTCCATCCCAGAGGGTTGCTTCCACAACCTAACCTCTTTGACTGACCTCTCTTTGGCCAATAACACCAACCTCCCACCATGGACCTTCCCTCTCCAATTGACTCATTCCTCATTGCAACTCAAGGTCCTCTTCCTGGAGGCTACAAATCTTATGGGATCCCTACCAAACTTATCTCATTTCTTCCCCAGCTTGAGAATTGTTTCTCTCTCCAACAACAACCTTACCTCCATCCCCCAAGGTTGCTTCCATGGCCTACCTTATTTGAATCGGCTGCACTTGGGAAACAACACCAACCTCGCACCATGGACCTTCCCCAACTTGACTCAGTCCACACAACTGCAAGAGCTCAATCTTACTGCTACAAATGTCATGGGCTCCCTATCATCGGAAATATTTCAGTCCATGCCAAATTTGAATACTGTTGTTCTCTCCAACAATAACCTCTTTGGTACCTTGCCAGAGTCTTTTAGACGGTCCAAGGTTGCCACTTTGCATCTCAACGACCAGAAGGGTAACGGCTTTTCGGGTACAATTGATGTCCTCTCAAGCATGATCGATTTATCTGAAGCGTGGCTTCAGGGAAACTCCTTTGAAGGATATATCCCTGACATGTCTCGTTGTACTGCCTTACAAGATTTACAACTTGCACACAATCGGTTAACAGGTGTGGTTCCAGATTCTCTGGTAAATCTAAGTTTGGGGAGCTTGCAAAGTGTTTCTTTGAACAACAACTTTTTGCAAGGTCCTATGCCTACATTTAACATTTATCCTGAGGTGAACGTTACCACAAATGCCTTTTGTCGAAATGATTCAGAGCCTTGTGACCAGAGAGTTAACACTTTGCTTGAAATTGCTCAAGCATTTAGATATCCTATTCTTTTGGCACGTTCATGGCCAGGGAATAATCCTTGTCATAATTGGAGTTTCGTCTCATGTAATGGAGGTATGATTACAACCGTGAATCTGACAAGCCAGAATTTGACAGGAACTATCTCAGATGCATTTGCTAAATTAACTCATTTGCAAAACTTGTATCTAAGTGGAAACAATTTAAACGGTTCAATACCTCAAAACTTGTCAACTCTTCATCAACTCAAGAATCTCGATGTCTCCAATAACAACTTATCAGGAAAAATTCCCAATTTCTCAAGCAGAGTAAACCTGAATACTACTGGCAATCCTTCTTTCGACATAAGAAATCCTTCCACCAAGAGAAGAAATCCGAATCCACATGCTTGGATCCCAGGCGCAATAGCAGCAGGTATTGGATGTCTTGTTTTCTTGGTTATAGTTATTCATCAGCGAAATAGGTGTCTTAGCTTATTACAGAGAATTTCATGTAAGAAAGCAGGACCATTTGTTGATAATGAATTTGAAGAATTCATAAAAAGCCATGGATCTTTGATGTTAAGGAGATATAATTATTCCCAAGTGAAAAAGATGACAAATTCATTTCGAGATAAATTAGGAAAGGGAGGATATGGCATTGTATACAAAGCATGCTTGAGTGATGGTTGTCCTGTGGCAGTGAAGGTATTAACTGAATCCAGTGGAAGTGGGGAGGAATTCATAAATGAGGTAGCAAGTATCAGCAGAACTTCTCATGTAAATATTGTCTCACTTTTGGGATTTTGTTACGAGAAGTATAAGAGGGCACTCATTTATGAGTTCATGCCTCATGGTTCTTTGGATAAGTTCATCTACAAACAAGAATGTCCCAATGCTATGTGTAATTTGGACTGGAATACACTGTTTCAAATTACAATTGGTATTGCAAGAGGATTAGAATATTTGCATCGAGGTTGTAATGCAAGAATTTTACATCTTGATATTAAGCCTCAAAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATCGCTGATTTTGGATTGGCAAAAATATGCAAGAAGAAGGAGAGTATTGTATCTTTTCTAGGTACAAGAGGAACTCCTGGATACATTGCACCAGAAGTATTCAGTCGAACCTTTGGTAAAGTTTCTCATAAATCTGATGTATACAGTTTTGGTATGTTAATTCTGGAATTGGTGGGAGGCAGAAAGAACTACGACACTGGTGCATCACTGACTAGTGAGATGTATTTTCCAGATTGGATTTACAGGGATCTTGAGGAGCAAAATATGTTTGGACGGGGTTTGCCCACTACTGAGGAAGAAAATGATACGATAAAGAAAATTACATTAGTGAGTTTATGGTGCATTCAAACAAGACCAGCAGATAGACCACCAATAAACAAAGTAGTAGAGATGTTAGAAGGGTCACTTGAATCAGTGCCATATCCTCCAAAACCTGAGTTGTATTCTCCTCAAATGTCTGTCTCACACTTTTCACGAATCTCCTATAGCTCTACAAATGAGGAGGATTCTGAAACTGTAGGGGAGACTGTTTCCATCAAATAA 3045 0.4108 MAYLKSESKIPSGFCYALVLLFSSLFMTSVLCDEAGDEGEYMMKLMNALNPPGWSNTSHMCNWTGVICNSQTGRIEGLALSYMSLTGTVPSGLNDSLTQLTSLFLYNNFLSGPLPSLANLTFLQQVILDNNNFNSIPHGCFHALTSLNLLSLYNNSKLPAWNFPTDLTAHSSQLKLLDLSYTNLMGSVPNISHFFPAMQALYLSNNNLSSIPEGCFHNLTSLTDLSLANNTNLPPWTFPLQLTHSSLQLKVLFLEATNLMGSLPNLSHFFPSLRIVSLSNNNLTSIPQGCFHGLPYLNRLHLGNNTNLAPWTFPNLTQSTQLQELNLTATNVMGSLSSEIFQSMPNLNTVVLSNNNLFGTLPESFRRSKVATLHLNDQKGNGFSGTIDVLSSMIDLSEAWLQGNSFEGYIPDMSRCTALQDLQLAHNRLTGVVPDSLVNLSLGSLQSVSLNNNFLQGPMPTFNIYPEVNVTTNAFCRNDSEPCDQRVNTLLEIAQAFRYPILLARSWPGNNPCHNWSFVSCNGGMITTVNLTSQNLTGTISDAFAKLTHLQNLYLSGNNLNGSIPQNLSTLHQLKNLDVSNNNLSGKIPNFSSRVNLNTTGNPSFDIRNPSTKRRNPNPHAWIPGAIAAGIGCLVFLVIVIHQRNRCLSLLQRISCKKAGPFVDNEFEEFIKSHGSLMLRRYNYSQVKKMTNSFRDKLGKGGYGIVYKACLSDGCPVAVKVLTESSGSGEEFINEVASISRTSHVNIVSLLGFCYEKYKRALIYEFMPHGSLDKFIYKQECPNAMCNLDWNTLFQITIGIARGLEYLHRGCNARILHLDIKPQNILLDEDFCPKIADFGLAKICKKKESIVSFLGTRGTPGYIAPEVFSRTFGKVSHKSDVYSFGMLILELVGGRKNYDTGASLTSEMYFPDWIYRDLEEQNMFGRGLPTTEEENDTIKKITLVSLWCIQTRPADRPPINKVVEMLEGSLESVPYPPKPELYSPQMSVSHFSRISYSSTNEEDSETVGETVSIK 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60877g00006 1014 ProSiteProfiles Leucine-rich repeat profile. 272 293 IPR001611 GO:0005515
Stsc60877g00006 1014 ProSiteProfiles Leucine-rich repeat profile. 573 595 IPR001611 GO:0005515
Stsc60877g00006 1014 ProSiteProfiles Leucine-rich repeat profile. 197 218 IPR001611 GO:0005515
Stsc60877g00006 1014 SUPERFAMILY L domain-like 58 375 - -
Stsc60877g00006 1014 FunFam Leucine-rich repeat receptor-like kinase 485 608 - -
Stsc60877g00006 1014 Pfam Leucine rich repeat N-terminal domain 487 522 IPR013210 -
Stsc60877g00006 1014 Pfam Leucine rich repeat N-terminal domain 37 69 IPR013210 -
Stsc60877g00006 1014 SMART LRR_typ_2 547 571 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 416 439 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 270 293 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 219 240 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 120 143 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 344 367 IPR003591 -
Stsc60877g00006 1014 SMART LRR_typ_2 195 218 IPR003591 -
Stsc60877g00006 1014 PANTHER OSJNBA0070M12.3 PROTEIN 248 972 - -
Stsc60877g00006 1014 Pfam Protein kinase domain 696 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00006 1014 Gene3D Phosphorylase Kinase; domain 1 665 766 - -
Stsc60877g00006 1014 FunFam PR5-like receptor kinase 767 976 - -
Stsc60877g00006 1014 FunFam serine/threonine-protein kinase PBS1-like 663 766 - -
Stsc60877g00006 1014 Gene3D Transferase(Phosphotransferase) domain 1 767 974 - -
Stsc60877g00006 1014 SUPERFAMILY Protein kinase-like (PK-like) 673 967 IPR011009 -
Stsc60877g00006 1014 SMART serkin_6 692 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00006 1014 SMART LRR_sd22_2 97 122 - -
Stsc60877g00006 1014 SMART LRR_sd22_2 571 593 - -
Stsc60877g00006 1014 SMART LRR_sd22_2 547 570 - -
Stsc60877g00006 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Stsc60877g00006 1014 Pfam Leucine rich repeat 173 230 IPR001611 GO:0005515
Stsc60877g00006 1014 Pfam Leucine rich repeat 527 584 IPR001611 GO:0005515
Stsc60877g00006 1014 Pfam Leucine rich repeat 271 322 IPR001611 GO:0005515
Stsc60877g00006 1014 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
Stsc60877g00006 1014 SUPERFAMILY RNI-like 316 606 - -
Stsc60877g00006 1014 Gene3D Ribonuclease Inhibitor 37 239 IPR032675 -
Stsc60877g00006 1014 Gene3D Ribonuclease Inhibitor 240 483 IPR032675 -
Stsc60877g00006 1014 ProSiteProfiles Protein kinase domain profile. 692 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60877g00006 1014 Gene3D Ribonuclease Inhibitor 484 608 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60877g00006 Stsc-Chr60877 23739 27063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60877g00006 678 988 Receptor kinase-like Gene Family AT5G38280 59.937 1.81e-125 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60877g00006 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60877g00006 - K00924 aip:107635702 1558.89